| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024B17 | Sequence | 322 | 007553 (4) | ref|XP_007027266.1| | 6e-20 | Pre-mRNA splicing factor-related [Theobroma cacao] gb|EOY07768.1| Pre-mRNA splic | 276 | 007553 (4) | ref|XP_007027266.1| | 4e-20 | Pre-mRNA splicing factor-related [Theobroma cacao] gb|EOY07768.1| Pre-mRNA splic |
| JMFN041G04 | Sequence | 633 | 007553 (4) | ref|XP_007027266.1| | 4e-41 | Pre-mRNA splicing factor-related [Theobroma cacao] gb|EOY07768.1| Pre-mRNA splic | |||||
| JMSF012D12 | Sequence | 487 | 003434 (6) | ref|XP_009797444.1| | 8e-55 | PREDICTED: protein STABILIZED1-like isoform X3 [Nicotiana sylvestris] | 774 | 007553 (4) | ref|XP_006357494.1| | 2e-120 | PREDICTED: pre-mRNA-processing factor 6-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF012D12+ GAACGACTTGGCAATTTGG
____________________________________________________________
consensus GAACGACTTGGCAATTTGG
. : . : . : . : . : . :
rJMSF012D12+ AGCAGGCAAAGAGTACATACGAGTCTGGTTTGAAGCACTGCCCTGATTGCATTCCGTTGT
____________________________________________________________
consensus AGCAGGCAAAGAGTACATACGAGTCTGGTTTGAAGCACTGCCCTGATTGCATTCCGTTGT
. : . : . : . : . : . :
rJMSF012D12+ GGCTATCCCTTGCAAAATTGGAGGAGAGGATGAATGGGCTGAGTAAAGCTCGAGCAGTTC
____________________________________________________________
consensus GGCTATCCCTTGCAAAATTGGAGGAGAGGATGAATGGGCTGAGTAAAGCTCGAGCAGTTC
. : . : . : . : . : . :
rJMSF012D12+ TTACGATGGCCAGGAAAAAGAACCCAAAGAATCCTGAACTCTGGCTTGCTGCAGTGCGGG
____________________________________________________________
consensus TTACGATGGCCAGGAAAAAGAACCCAAAGAATCCTGAACTCTGGCTTGCTGCAGTGCGGG
. : . : . : . : . : . :
rJMSF012D12+ CTGAGGCTCGGCATAGCTACAAGAAGGAAGCTGATGTTTTGATGGCAAAGGCATTACAAG
____________________________________________________________
consensus CTGAGGCTCGGCATAGCTACAAGAAGGAAGCTGATGTTTTGATGGCAAAGGCATTACAAG
. : . : . : . : . : . :
rJMSF012D12+ AGTGCCCAACCAGTGGTATACTATTGGCTGCTTCAATTGAGATGGCACCTCGTCCACAGC
____________________________________________________________
consensus AGTGCCCAACCAGTGGTATACTATTGGCTGCTTCAATTGAGATGGCACCTCGTCCACAGC
. : . : . : . : . : . :
rJMSF012D12+ GAAGATCCACAAGTGCAGATGCTTATAAAAAGTGCAACCAGGATCCCTATGTCCTTGCTG
____________________________________________________________
consensus GAAGATCCACAAGTGCAGATGCTTATAAAAAGTGCAACCAGGATCCCTATGTCCTTGCTG
. : . : . : . : . : . :
rJMSF012D12+ CCATTGCAAAGTTATTCTGGAATGACAGGAAGGTTGACAAAGCTAGGAGTTGGTTCAGCA
JMFN041G04+ GGAAGGTTGACAAAGCTAGGAGTTGGTTCAGCA
____________________________________________________________
consensus CCATTGCAAAGTTATTCTGGAATGACAGGAAGGTTGACAAAGCTAGGAGTTGGTTCAGCA
. : . : . : . : . : . :
rJMSF012D12+ GAGCTGTCACTCTTGCACCAGATATTGGTGATTTCTGGGCTTTGTTTTACAGATTCGAGG
JMFN041G04+ GAGCTGTCACTCTTGCACCAGATATTGGTGATTTCTGGGCTTTGTTTTACAGATTCGAGG
____________________________________________________________
consensus GAGCTGTCACTCTTGCACCAGATATTGGTGATTTCTGGGCTTTGTTTTACAGATTCGAGG
. : . : . : . : . : . :
rJMSF012D12+ AGCAGTTTGGTTCCGAAGATGGACGGAACGATGTATTACGGAAATGTGTTGCAGCGGAGC
rJMFF024B17+ TTTGGTTCCGAAGATGGACGGAACGATGTATTACGGAAATGTGTTGCAGCGGAGC
JMFF024B17- TTTGGTTCCGAAGATGGACGGAACGATGTATTACGGAAATGTGTTGCAGCGGAGC
JMFN041G04+ AGCAGTTTGGTTCCGAAGATGGACGGAACGATGTATTACGGAAATGTGTTGCAGCGGAGC
____________________________________________________________
consensus AGCAGTTTGGTTCCGAAGATGGACGGAACGATGTATTACGGAAATGTGTTGCAGCGGAGC
. : . : . : . : . : . :
rJMSF012D12+ CAAAACATGGTGAAAAATGGCAAGCAATTGCTAAGTCTGTGGAGAACTCTCACAAGCCAA
rJMFF024B17+ CAAAACATGGTGAAAAATGGCAAGCAATTGCTAAGTCTGTGGAGAACTCTCACAAGCCAA
JMFF024B17- CAAAACATGGTGAAAAATGGCAAGCAATTGCTAAGTCTGTGGAGAACTCTCACAAGCCAA
JMFN041G04+ CAAAACATGGTGAAAAATGGCAAGCAATTGCTAAGTCTGTGGAGAACTCTCACAAGCCAA
____________________________________________________________
consensus CAAAACATGGTGAAAAATGGCAAGCAATTGCTAAGTCTGTGGAGAACTCTCACAAGCCAA
. : . : . : . : . : . :
rJMSF012D12+ CAGATGAAATCCTGCGTCAAGTGGTAGCTGCCCTAAAGAAGGAAGAGAATGCTGCTGAGA
rJMFF024B17+ CAGATGAAATCCTGCGTCAAGTGGTAGCTGCCCTAAAGAAGGAAGAGAATGCTGCTGAGA
JMFF024B17- CAGATGAAATCCTGCGTCAAGTGGTAGCTGCCCTAAAGAAGGAAGAGAATGCTGCTGAGA
JMFN041G04+ CAGATGAAATCCTGCGTCAAGTGGTAGCTGCCCTAAAGAAGGAAGAGAATGCTGCTGAGA
____________________________________________________________
consensus CAGATGAAATCCTGCGTCAAGTGGTAGCTGCCCTAAAGAAGGAAGAGAATGCTGCTGAGA
. : . : . : . : . : . :
rJMSF012D12+ TCAATGAACCATAGTCTACTGTAACTTTGATAGTTTTTCTGTGATCTATTATCTAGTTGA
rJMFF024B17+ TCAATGAACCATAGTCTACTGTAACTTTGATAGTTTTTCTGTGATCTATTATCTAGTTGA
JMFF024B17- TCAATGAACCATAGTCTACTGTAACTTTGATAGTTTTTCTGTGATCTATTATCTAGTTGA
JMFN041G04+ TCAATGAACCATAGTCTACTGTAACTTTGATAGTTTTTCTGTGATCTATTATCTAGTTGA
____________________________________________________________
consensus TCAATGAACCATAGTCTACTGTAACTTTGATAGTTTTTCTGTGATCTATTATCTAGTTGA
. : . : . : . : . : . :
rJMSF012D12+ CATTTAAATAGCAAGTACAA
rJMFF024B17+ CATTTAAATAGCAAGTACAA
JMFF024B17- CATTTAAATAGCAAGTACAAGTGGTTTATTTCTTTCAGGTATTAAATTTTGCTCATCAAT
JMFN041G04+ CATTTAAATAGCAAGTACAAGTGGTTTATTTCTTTCAGGTATTAAATTTTGCTCATCAAT
____________________________________________________________
consensus CATTTAAATAGCAAGTACAAGTGGTTTATTTCTTTCAGGTATTAAATTTTGCTCATCAAT
. : . : . : . : . : . :
JMFF024B17- CTATATCTTCATGTG
JMFN041G04+ CTATATCTTCATGTGTGAACACGAGTGGACCTTTGCCTTTGCTTTCTATTCTATGAGCAG
____________________________________________________________
consensus CTATATCTTCATGTGTGAACACGAGTGGACCTTTGCCTTTGCTTTCTATTCTATGAGCAG
. : . : . : . : . : . :
JMFN041G04+ GCGCAATGTTGGCAGTGTGGATGAATTGCATTGGACTACTTTCAATTTCTTGTACTTCTT
____________________________________________________________
consensus GCGCAATGTTGGCAGTGTGGATGAATTGCATTGGACTACTTTCAATTTCTTGTACTTCTT
. : . : . : . : . : . :
JMFN041G04+ TGATCTTGATGTTTCATTGATGGATTGTTGATACTTCTAAAGTTCATTACTGAGAATGGA
____________________________________________________________
consensus TGATCTTGATGTTTCATTGATGGATTGTTGATACTTCTAAAGTTCATTACTGAGAATGGA
. : . : . : . : . : . :
JMFN041G04+ TTACTCCTAACTCCATTTTGTCTGTTCXXXXXXXXXXXXXXXXXXCTGAGACTAGTTCTC
____________________________________________________________
consensus TTACTCCTAACTCCATTTTGTCTGTTCNNNNNNNNNNNNNNNNNNCTGAGACTAGTTCTC