Contig 007549:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008B02Sequence625007549 (3)ref|XP_009787201.1|1e-58PREDICTED: DNA-binding protein DDB_G0278111-like isoform X1 [Nicotiana sylvestr
JMFN014O16Sequence574007549 (3)ref|XP_009787201.1|2e-58PREDICTED: DNA-binding protein DDB_G0278111-like isoform X1 [Nicotiana sylvestr
JMFN039A04Sequence629007549 (3)ref|XP_009787201.1|1e-58PREDICTED: DNA-binding protein DDB_G0278111-like isoform X1 [Nicotiana sylvestr

Alignment

This contig is upended


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JMFN014O16+                                   ACAAAAACTGATGATTTAGCATTGTGCTAACAAAGT
JMFN008B02+                                           TGATGATTTAGCATTGTGCTAACANAGT
JMFN039A04+                                           TGATGATTTAGCATTGTGCTAACAAAGT
                      ____________________________________________________________
consensus                                     ACAAAAACTGATGATTTAGCATTGTGCTAACAAAGT
 
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JMFN014O16+           CAGACAACACACAAGTACATAAGCAAATAGGCATTAACCACAAGCTGGTTTCTCATGTAG
JMFN008B02+           CAGACAACACACAAGTACATAAGCAAATAGGCATTAACCACAAGCTGGTTTCTCATGTAG
JMFN039A04+           CAGACAACACACAAGTACATAAGCAAATAGGCATTAACCACAAGCTGGTTTCTCATGTAG
                      ____________________________________________________________
consensus             CAGACAACACACAAGTACATAAGCAAATAGGCATTAACCACAAGCTGGTTTCTCATGTAG
 
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JMFN014O16+           ATACAAGCAAGTACTACTATATATAATCAATACTCAAAACAGGAAGCATGGACCTAATCA
JMFN008B02+           ATACAAGCAAGTACTACTATATATAATCAATACTCAAAACAGGAAGCATGGACCTAATCA
JMFN039A04+           ATACAAGCAAGTACTACTATATATAATCAATACTCAAAACAGGAAGCATGGACCTAATCA
                      ____________________________________________________________
consensus             ATACAAGCAAGTACTACTATATATAATCAATACTCAAAACAGGAAGCATGGACCTAATCA
 
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JMFN014O16+           TCGTCCTCGAGAACGTTGCGACGCCTCTGGATCGTTACTTTTGTTTGTTTGGTGGTTTGA
JMFN008B02+           TCGTCCTCGAGAACGTTGCGACGCCTCTGGATCGTTACTTTTGTTTGTTTGGTGGTTTGA
JMFN039A04+           TCGTCCTCGAGAACGTTGCGACGCCTCTGGATCGTTACTTTTGTTTGTTTGGTGGTTTGA
                      ____________________________________________________________
consensus             TCGTCCTCGAGAACGTTGCGACGCCTCTGGATCGTTACTTTTGTTTGTTTGGTGGTTTGA
 
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JMFN014O16+           GTGTTGATCTGTTCAAGCAATTGTATCAGCTTTTCTTCAGACACCTTCTCAGTAATCTGG
JMFN008B02+           GTGTTGATCTGTTCAAGCAATTGTATCAGCTTTTCTTCAGACACCTTCTCAGTAATCTGG
JMFN039A04+           GTGTTGATCTGTTCAAGCAATTGTATCAGCTTTTCTTCAGACACCTTCTCAGTAATCTGG
                      ____________________________________________________________
consensus             GTGTTGATCTGTTCAAGCAATTGTATCAGCTTTTCTTCAGACACCTTCTCAGTAATCTGG
 
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JMFN014O16+           CCAAATTGAGCAGCTCTGAGTATAACATCTTCAACTCCTCTGGCCTTTTCGGGCTTCACT
JMFN008B02+           CCAAATTGAGCAGCTCTGAGTATAACATCTTCAACTCCTCTGGCCTTTTCGGGCTTCACT
JMFN039A04+           CCAAATTGAGCAGCTCTGAGTATAACATCTTCAACTCCTCTGGCCTTTTCGGGCTTCACT
                      ____________________________________________________________
consensus             CCAAATTGAGCAGCTCTGAGTATAACATCTTCAACTCCTCTGGCCTTTTCGGGCTTCACT
 
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JMFN014O16+           AGTGCAATTCGGGCAACTCTTTCTCTTGCTTGAGAAGTGAGAAGCTGACTAAGCATCATT
JMFN008B02+           AGTGCAATTCGGGCAACTCTTTCTCTTGCTTGAGAAGTGAGAAGCTGACTAAGCATCATT
JMFN039A04+           AGTGCAATTCGGGCAACTCTTTCTCTTGCTTGAGAAGTGAGAAGCTGACTAAGCATCATT
                      ____________________________________________________________
consensus             AGTGCAATTCGGGCAACTCTTTCTCTTGCTTGAGAAGTGAGAAGCTGACTAAGCATCATT
 
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JMFN014O16+           TGCCTTCGATCCTCGGCCTCCCTTTTAGCTTCATCTTGAGCCTTTTGTTGATCAGGGTTT
JMFN008B02+           TGCCTTCGATCCTCGGCCTCCCTTTTAGCTTCATCTTGAGCCTTTTGTTGATCAGGGTTT
JMFN039A04+           TGCCTTCGATCCTCGGCCTCCCTTTTAGCTTCATCTTGAGCCTTTTGTTGATCAGGGTTT
                      ____________________________________________________________
consensus             TGCCTTCGATCCTCGGCCTCCCTTTTAGCTTCATCTTGAGCCTTTTGTTGATCAGGGTTT
 
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JMFN014O16+           TGATTATTTCCAGCCCCATGTTGAGCCATCAGCTCCTGCATTCTCCTTTGCCGGATAGCT
JMFN008B02+           TGATTATTTCCAGCCCCATGTTGAGCCATCAGCTCCTGCATTCTCCTTTGCCGGATAGCT
JMFN039A04+           TGATTATTTCCAGCCCCATGTTGAGCCATCAGCTCCTGCATTCTCCTTTGCCGGATAGCT
                      ____________________________________________________________
consensus             TGATTATTTCCAGCCCCATGTTGAGCCATCAGCTCCTGCATTCTCCTTTGCCGGATAGCT
 
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JMFN014O16+           TCTAATTCAGGGTCAGCCATTAATCTGTGCAGAATTGGATCGAGGAGCGCGGAGGAGA  
JMFN008B02+           TCTAATTCAGGGTCAGCCATTAATCTGTGCAGAATTGGATCGAGGAGCGCGGAGGAGAGG
JMFN039A04+           TCTAATTCAGGGTCAGCCATTAATCTGTGCAGAATTGGATCGAGGAGCGCGGAGGAGAGG
                      ____________________________________________________________
consensus             TCTAATTCAGGGTCAGCCATTAATCTGTGCAGAATTGGATCGAGGAGCGCGGAGGAGAGG
 
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JMFN008B02+           AAATCGAAGAGCAAAAAGCAGCGTTTCAAGAACGCGATTGAAGAGTGGGAGTGGTGG   
JMFN039A04+           AAATCGAAGAGCAAAAAGCAGCGTTTCAAGAACGCGATTGAAGAGTGGGAGTGGTGGCAC
                      ____________________________________________________________
consensus             AAATCGAAGAGCAAAAAGCAGCGTTTCAAGAACGCGATTGAAGAGTGGGAGTGGTGGCAC