Contig 007544:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN035J08Sequence537007544 (3)ref|XP_008375408.1|1e-20PREDICTED: SUN domain-containing protein 2-like isoform X1 [Malus domestica]
JMSF013D18Sequence422002153 (2)751007544 (3)ref|XP_002523394.1|2e-81conserved hypothetical protein [Ricinus communis] gb|EEF38973.1| conserved hypot
JMSF043B21Sequence783007544 (3)gb|KHN10309.1|8e-74SUN domain-containing protein 1 [Glycine soja]

Alignment

This contig is upended


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rJMSF013D18+                   CTAATCGGTATAGAGTTCATTCAGATGCCCTGAAGATGCTGACACCAAGTT
rJMSF043B21+                          GTATAGAGTTCATTCAGATGCCCTGAAGATGCTGACACCAAGTT
                      ____________________________________________________________
consensus                      CTAATCGGTATAGAGTTCATTCAGATGCCCTGAAGATGCTGACACCAAGTT
 
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rJMSF013D18+          TTGGAGAACCTGGGCAATG-TTTTCCACTTAAAGG-AAACAGTGGA-TTTGTCCAGATCA
rJMSF043B21+          TTGGAGAACCTGGGCAATGTTTTTCCACTTAAAGGAAAACAGTGGATTTTGTCCAGATCA
                      ____________________________________________________________
consensus             TTGGAGAACCTGGGCAATGTTTTTCCACTTAAAGGAAAACAGTGGATTTTGTCCAGATCA
 
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rJMSF013D18+          GGCTACGAACAGCCATTATTCCAGAGGCTGTGACACTGGAACATGTTGCTAAGAGTGTTG
rJMSF043B21+          GGCTACGAACAGCCATTATTCCAGAGGCTGTGACACTGGAACATGTTGCTAAGAGTGTTG
                      ____________________________________________________________
consensus             GGCTACGAACAGCCATTATTCCAGAGGCTGTGACACTGGAACATGTTGCTAAGAGTGTTG
 
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rJMSF013D18+          CTTATGATAGGTCCAGTGCTCCCAAGGACTGCAGGGTCTCTGGATGGCTCCAACGGCAAG
rJMSF043B21+          CTTATGATAGGTCCAGTGCTCCCAAGGACTGCAGGGTCTCTGGATGGCTCCAACGGCAAG
                      ____________________________________________________________
consensus             CTTATGATAGGTCCAGTGCTCCCAAGGACTGCAGGGTCTCTGGATGGCTCCAACGGCAAG
 
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rJMSF013D18+          ATATGGCCGATGCAGCAGTTGATGGTGAGAAGATGTTTCTTTTGACGGAATTTACATACG
rJMSF043B21+          ATATGGCCGATGCAGCAGTTGATGGTGAGAAGATGTTTCTTTTGACGGAATTTACATACG
                      ____________________________________________________________
consensus             ATATGGCCGATGCAGCAGTTGATGGTGAGAAGATGTTTCTTTTGACGGAATTTACATACG
 
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rJMSF013D18+          ATCTTGAGAAGACCAGTGCTCAAACTTTCAACGTGCTGGAGTCTGCAGCCTCGAGTGTTG
rJMSF043B21+          ATCTTGAGAAGACCAGTGCTCAAACTTTCAACGTGCTGGAGTCTGCAGCCTCGAGTGTTG
JMFN035J08-              TTGAGAAGACCAGTGCTCAAACTTTCAACGTGCTGGAGTCTGCAGCCTCGAGTGTTG
                      ____________________________________________________________
consensus             ATCTTGAGAAGACCAGTGCTCAAACTTTCAACGTGCTGGAGTCTGCAGCCTCGAGTGTTG
 
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rJMSF013D18+          TCGACACAATCAGGTTAGATTTTGGATCTAATCACGGGAACCCTTTGCATACATGCATCT
rJMSF043B21+          TCGACACAATCAGGTTAGATTTTGGATCTAATCACGGGAACCCTTTGCATACATGCATCT
JMFN035J08-           TCGACACAATCAGGTTAGATTTTGGATCTAATCACGGGAACCCTTTGCATACATGCATCT
                      ____________________________________________________________
consensus             TCGACACAATCAGGTTAGATTTTGGATCTAATCACGGGAACCCTTTGCATACATGCATCT
 
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rJMSF013D18+          ACAGATTGAGGGTACACGGAAGTGAACCCAACTCTGTGTCAATGATGCCAATGGAGTCAT
rJMSF043B21+          ACAGATTGAGGGTACACGGAAGTGAACCCAACTCTGTGTCAATGATGCCAATGGAGTCAT
JMFN035J08-           ACAGATTGAGGGTACACGGAAGTGAACCCAACTCTGTGTCAATGATGCCAATGGAGTCAT
                      ____________________________________________________________
consensus             ACAGATTGAGGGTACACGGAAGTGAACCCAACTCTGTGTCAATGATGCCAATGGAGTCAT
 
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rJMSF013D18+          GACACTATCATTACTTGGTGGCTGTTGGCATCACTTTGTGCTTTGTCCTATTTATGTTTG
rJMSF043B21+          GACACTATCATTACTTGGTGGCTGTTGGCATCACTTTGTGCTTTGTCCTATTTATGTTTG
JMFN035J08-           GACACTATCATTACTTGGTGGCTGTTGGCATCACTTTGTGCTTTGTCCTATTTATGTTTG
                      ____________________________________________________________
consensus             GACACTATCATTACTTGGTGGCTGTTGGCATCACTTTGTGCTTTGTCCTATTTATGTTTG
 
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rJMSF013D18+          TAACCTTCCTAGGTGTTCATTGCTAGTACTAGTAGATGTATCAACAAGTTCCCAATATTA
rJMSF043B21+          TAACCTTCCTAGGTGTTCATTGCTAGTACTAGTAGATGTATCAACAAGTTCCCAATATTA
JMFN035J08-           TAACCTTCCTAGGTGTTCATTGCTAGTACTAGTAGATGTATCAACAAGTTCCCAATATTA
                      ____________________________________________________________
consensus             TAACCTTCCTAGGTGTTCATTGCTAGTACTAGTAGATGTATCAACAAGTTCCCAATATTA
 
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rJMSF013D18+          TCCTTCCCTATCGTCGTCTTTAGGGAGCATTGTTTTGTACTTAGTTGGAGGGTAGACATG
rJMSF043B21+          TCCTTCCCTATCGTCGTCTTTAGGGAGCATTGTTTTGTACTTAGTTGGAGGGTAGACATG
JMFN035J08-           TCCTTCCCTATCGTCGTCTTTAGGGAGCATTGTTTTGTACTTAGTTGGAGGGTAGACATG
                      ____________________________________________________________
consensus             TCCTTCCCTATCGTCGTCTTTAGGGAGCATTGTTTTGTACTTAGTTGGAGGGTAGACATG
 
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rJMSF013D18+          TAAATGTGATTTTCGTTTCTCAGCTTGACATTATCTACTTAAGTTCGAGTTGAAGAACTC
rJMSF043B21+          TAAATGTGATTTTCGTTTCTCAGCTTGACATTATCTACTTAAGTTCGAGTTGAAGAACTC
JMFN035J08-           TAAATGTGATTTTCGTTTCTCAGCTTGACATTATCTACTTAAGTTCGAGTTGAAGAACTC
                      ____________________________________________________________
consensus             TAAATGTGATTTTCGTTTCTCAGCTTGACATTATCTACTTAAGTTCGAGTTGAAGAACTC
 
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rJMSF013D18+          GTAGACTAGAAATTTGGTAGCAAGTCATGCTCTTGTAAAACT                  
rJMSF043B21+          GTAGACTAGAAATTTGGTAGCAAGTCATGCTCTTGTAAAACTTGGAGTACCCTCGTAAAC
JMFN035J08-           GTAGACTAGAAATTTGGTAGCAAGTCATGCTCTTGTAAAACTTGGAGTACCCTCGTAAAC
                      ____________________________________________________________
consensus             GTAGACTAGAAATTTGGTAGCAAGTCATGCTCTTGTAAAACTTGGAGTACCCTCGTAAAC
 
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rJMSF043B21+          AATTACTCTTGCCTCGTTC                                         
JMFN035J08-           AATTACTCTTGCCTCGTTCCTTAGTTTGCCAGAAAATGGTTGTGTAAAATACTCTGTTAG
                      ____________________________________________________________
consensus             AATTACTCTTGCCTCGTTCCTTAGTTTGCCAGAAAATGGTTGTGTAAAATACTCTGTTAG