Contig 007539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN033N18Sequence542007539 (2)ref|XP_009773209.1|1e-36PREDICTED: high mobility group B protein 1 [Nicotiana sylvestris] ref|XP_0097732
JMFN034M11Sequence603007539 (2)emb|CAJ38371.1|4e-20HMG-protein [Plantago major]

Alignment

This contig is upended


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JMFN034M11+                                                  ATGCTGGCAAAATAGAATAAC
                      ____________________________________________________________
consensus                                                    ATGCTGGCAAAATAGAATAAC
 
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JMFN034M11+           ACCAAATGGTAAATGGCCAATAACATTGATAATTAGAACTGCAGTGATAATCTAAAGATC
                      ____________________________________________________________
consensus             ACCAAATGGTAAATGGCCAATAACATTGATAATTAGAACTGCAGTGATAATCTAAAGATC
 
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JMFN034M11+           AAAAGGATACAAAATACCATAAGTTCATAATATAGGTGCAAATGGATATACAGAAATTCA
                      ____________________________________________________________
consensus             AAAAGGATACAAAATACCATAAGTTCATAATATAGGTGCAAATGGATATACAGAAATTCA
 
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JMFN034M11+           TCCAGATCTATGTAGATAGGAGTCATATCTTGCCCTATGTGATAATTTTATGATCCTGCA
                      ____________________________________________________________
consensus             TCCAGATCTATGTAGATAGGAGTCATATCTTGCCCTATGTGATAATTTTATGATCCTGCA
 
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JMFN034M11+           ATGTCACCTAGAATGGTAAGCATACACAAGATATACTCCGTATGTTACAGTCGACCTATA
                      ____________________________________________________________
consensus             ATGTCACCTAGAATGGTAAGCATACACAAGATATACTCCGTATGTTACAGTCGACCTATA
 
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JMFN034M11+           ATATAAACGTTCAGCATCCAGCAGCCATGGATATATAACATGGATCCCAAATAACTTTAG
JMFN033N18+                                                                     AG
                      ____________________________________________________________
consensus             ATATAAACGTTCAGCATCCAGCAGCCATGGATATATAACATGGATCCCAAATAACTTTAG
 
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JMFN034M11+           TCATCATCTTCATCGTCATCCTCTTCTTCCTCATCATCTTCTTCCCCCTGCCCACTTTCC
JMFN033N18+           TCATCATCTTCATCGTCATCCTCTTCTTCCTCATCATCTTCTTCCCCCTGCCCACTTTCC
                      ____________________________________________________________
consensus             TCATCATCTTCATCGTCATCCTCTTCTTCCTCATCATCTTCTTCCCCCTGCCCACTTTCC
 
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JMFN034M11+           TCGTCCTCATCATGCACTTCAGAGTTTGACTTTTCCGATTCTTCATCAGCTGAGCTTTCC
JMFN033N18+           TCGTCCTCATCATGCACTTCAGAGTTTGACTTTTCCGATTCTTCATCAGCTGAGCTTTCC
                      ____________________________________________________________
consensus             TCGTCCTCATCATGCACTTCAGAGTTTGACTTTTCCGATTCTTCATCAGCTGAGCTTTCC
 
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JMFN034M11+           TGCTTCTTGTTATAGGCATTCATTAGCTTTTCATAATCAACCTTCCTTGCAGCAGCCTTT
JMFN033N18+           TGCTTCTTGTTATAGGCATTCATTAGCTTTTCATAATCAACCTTCCTTGCAGCAGCCTTT
                      ____________________________________________________________
consensus             TGCTTCTTGTTATAGGCATTCATTAGCTTTTCATAATCAACCTTCCTTGCAGCAGCCTTT
 
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JMFN034M11+           GCTTCGTAAGGAGCTTTTTCAGCTGCAGTCAATGATTTCCACTTCTCTCCCCCAGCTTTC
JMFN033N18+           GCTTCGTAAGGAGCTTTTTCAGCTGCAGTCAATGATTTCCACTTCTCTCCCCCAGCTTTC
                      ____________________________________________________________
consensus             GCTTCGTAAGGAGCTTTTTCAGCTGCAGTCAATGATTTCCACTTCTCTCCCCCAGCTTTC
 
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JMFN034M11+           CCGACAGCTGATACAGCCTTCACATTGGGGTTTTCTTTTTTA                  
JMFN033N18+           CCGACAGCTGATACAGCCTTCACATTGGGGTTTTCTTTTTTAAATGTCTTCCGGAACTCC
                      ____________________________________________________________
consensus             CCGACAGCTGATACAGCCTTCACATTGGGGTTTTCTTTTTTAAATGTCTTCCGGAACTCC
 
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JMFN033N18+           TCAAGGAATACAAAGAAAGCACTTGGTGGCCTCTTGGGCTTGTTAGGGTCTTTCTTAGCC
                      ____________________________________________________________
consensus             TCAAGGAATACAAAGAAAGCACTTGGTGGCCTCTTGGGCTTGTTAGGGTCTTTCTTAGCC
 
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JMFN033N18+           TTCTTCTCCTTCTTAGCTTTTCCCTTGTCGGCCTTCTGGGCAGCCTTTCTCTTCCCAGAC
                      ____________________________________________________________
consensus             TTCTTCTCCTTCTTAGCTTTTCCCTTGTCGGCCTTCTGGGCAGCCTTTCTCTTCCCAGAC
 
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JMFN033N18+           TTTCTGTCATCAACAACAGGCTTCAATGCCGCTTTTGTTTCTTTTCTTGATGCTGCTTTC
                      ____________________________________________________________
consensus             TTTCTGTCATCAACAACAGGCTTCAATGCCGCTTTTGTTTCTTTTCTTGATGCTGCTTTC
 
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JMFN033N18+           CCCTTTGCACTCTTCATTGTTCAAGCCTTGAGAGATAAGGAGTGATCGGCGATCACGGCC
                      ____________________________________________________________
consensus             CCCTTTGCACTCTTCATTGTTCAAGCCTTGAGAGATAAGGAGTGATCGGCGATCACGGCC