Contig 007531:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN017J22Sequence548007531 (7)ref|XP_006373445.1|1e-16hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo
JMFN019O06Sequence615007531 (7)ref|XP_006373445.1|2e-15hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo
JMFN033M07Sequence548007531 (7)ref|XP_006373445.1|2e-15hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo
JMSF033G09Sequence633007531 (7)ref|XP_006373445.1|3e-15hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo577007531 (7)ref|XP_006373445.1|2e-15hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo
JMSF033I11Sequence635007531 (7)ref|XP_006373445.1|3e-15hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo576007531 (7)ref|XP_006373445.1|2e-15hypothetical protein POPTR_0017s13830g [Populus trichocarpa] gb|ERP51242.1| hypo

Alignment

This contig is upended


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JMSF033I11+                            TNAGAGGTGAAAATTGTTAAGCTTGTACAATGTTTAGTCATAA
JMFN033M07+                                 GGTGAAAATTGTTAAGCTTGTACAATGTTTAGTCATAA
JMFN017J22+                                 GGTGAAAATTGTTAAGCTTGTACAATGTTTAGTCATAA
JMSF033G09+                                 GGTGAAAATTGTTAAGCTTGTACAATGTTTAGTCATAA
JMFN019O06+                                                        AATGTTTAGTCATAA
                      ____________________________________________________________
consensus                              TNAGAGGTGAAAATTGTTAAGCTTGTACAATGTTTAGTCATAA
 
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JMSF033I11+           AATACAACACAACAACAATGCCACTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
rJMSF033I11-                          AATGCCACTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
rJMSF033G09-                                         GTAGTTCAGTGGTATGGATGTGAGACTCA
JMFN033M07+           AATACAACACAACAACAATGCCACTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
JMFN017J22+           AATACAACACAACAACAATGCCACTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
JMSF033G09+           AATACAACACAACAACAATGCCACTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
JMFN019O06+           AATACAACACAACACCAATGCCNCTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
                      ____________________________________________________________
consensus             AATACAACACAACAACAATGCCACTGACCTTGTAGTTCAGTGGTATGGATGTGAGACTCA
 
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JMSF033I11+           ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACAAACAACACC
rJMSF033I11-          ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACNAACAACACC
rJMSF033G09-          ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACNAACAACACC
JMFN033M07+           ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACAAACAACACC
JMFN017J22+           ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACAAACAACACC
JMSF033G09+           ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACAAACAACACC
JMFN019O06+           ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACAAACAACACC
                      ____________________________________________________________
consensus             ATATTAGACGCATCGAGATTGGATCTCGATTGCCTTATTTGTACACACACAAACAACACC
 
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JMSF033I11+           AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
rJMSF033I11-          AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
rJMSF033G09-          AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
JMFN033M07+           AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
JMFN017J22+           AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
JMSF033G09+           AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
JMFN019O06+           AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
                      ____________________________________________________________
consensus             AATAAGCACCGAGGCACAATGCCAGAGTACACCATCGAGTTTTACAAGACCTTACAGACT
 
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JMSF033I11+           GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
rJMSF033I11-          GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
rJMSF033G09-          GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
JMFN033M07+           GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
JMFN017J22+           GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
JMSF033G09+           GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
JMFN019O06+           GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
                      ____________________________________________________________
consensus             GGGAACCGATACACCTTAGAAATATTCCAACTGCACAGCTTATACTCTCATCGGCCCCTT
 
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JMSF033I11+           ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
rJMSF033I11-          ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
rJMSF033G09-          ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
JMFN033M07+           ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
JMFN017J22+           ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
JMSF033G09+           ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
JMFN019O06+           ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
                      ____________________________________________________________
consensus             ACCGACTTACAGTCCTGCTAAAGTGAGTACTTGTGCTTCATTTCTTCCAAGACCGAGTCA
 
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JMSF033I11+           TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
rJMSF033I11-          TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
rJMSF033G09-          TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
JMFN033M07+           TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
JMFN017J22+           TTGCAATACTGGTGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
JMSF033G09+           TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
JMFN019O06+           TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
                      ____________________________________________________________
consensus             TTGCAATACTGGCGCATGCAATCATTGTATTCTTTAAACTGTTTGCTGCACCTCCGACTC
 
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JMSF033I11+           GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
rJMSF033I11-          GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
rJMSF033G09-          GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
JMFN033M07+           GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
JMFN017J22+           GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
JMSF033G09+           GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
JMFN019O06+           GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
                      ____________________________________________________________
consensus             GCAAATAATAATTTTTTTTCAGAACATTCAGAATACTTATCCAAATATTCAGAACATTTC
 
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JMSF033I11+           TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
rJMSF033I11-          TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
rJMSF033G09-          TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
JMFN033M07+           TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
JMFN017J22+           TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
JMSF033G09+           TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
JMFN019O06+           TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
                      ____________________________________________________________
consensus             TTTTGCGCATCCTGCTCCATTTTGCTGTGCAAAGCTCGTTCAAGCTTCGTCCTACCACCA
 
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JMSF033I11+           CCCTCTTCTTGCGCTAATCCCATGAAGTGTGTCTCTGCTGGAAGGAACCTGCACAGCAGC
rJMSF033I11-          CCCTCTTCTTGCGCTAATCCCATGAAGTGTGTCTCTGCTGGAAGGAACCTGCACAGCAGC
rJMSF033G09-          CCCTCTTCTTGCGCTAATCCCATGAAGTGTGTCTCTGCTGGAAGGAACCTGCACAGCAGC
JMFN033M07+           CCCTCTTCTTGCGCTAATCCCATGAAGT                                
JMFN017J22+           CCCTCTTCTTGCGCTAATCCCATGAAGTGT                              
JMSF033G09+           CCCTCTTCTTGCGCTAATCCCATGAAGTGTGTCTCTGCTGGAAGGAACCTGCACAGCAGC
JMFN019O06+           CCCTCTTCTTGCGCTAATCCCATGAAGTGTGTCTCTGCTGGAAGGAACCTGCACAGCAGC
                      ____________________________________________________________
consensus             CCCTCTTCTTGCGCTAATCCCATGAAGTGTGTCTCTGCTGGAAGGAACCTGCACAGCAGC
 
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JMSF033I11+           AGTTTCGAGTATTTGTTGATGGATTAGGTTACCGAATGCACTTCTCTCGTCC        
rJMSF033I11-          AGTTTCGAGTATTTGTTGATGGATTAGGTTACCGAATGCACTTCTCTCGTCC        
rJMSF033G09-          AGTTTCGAGTATTTGTTGATGGATTAGGTTACCGAATGCACTTCTCTCGTCC        
JMSF033G09+           AGTTTCGAGTATTTGTTGATGGATTAGGTTACCGAATGCACTTCTCTCGTCC        
JMFN019O06+           AGTTTCGAGTATTTGTTGATGGATTAGGTTACCGAATGCACTTCTCTCTTCACCTGTTTA
                      ____________________________________________________________
consensus             AGTTTCGAGTATTTGTTGATGGATTAGGTTACCGAATGCACTTCTCTCGTCCCCTGTTTA