Contig 007520:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN014N17Sequence618007520 (2)ref|XP_011088280.1|5e-26PREDICTED: cyclin-dependent kinase inhibitor 7-like isoform X1 [Sesamum indicum
JMSF044G23Sequence727006020 (2)gb|KDO73212.1|3e-88hypothetical protein CISIN_1g011146mg [Citrus sinensis]131007520 (2)gb|KJB12227.1|6e-08hypothetical protein B456_002G007400 [Gossypium raimondii]

Alignment

This contig is upended


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JMFN014N17- GGAATGAGTAGTGAGACG
                      ____________________________________________________________
consensus GGAATGAGTAGTGAGACG
 
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JMFN014N17- CCTCCATCAAGCGAGCTTTGCGGAGATTCAATAGCAGAAATGGAGTCCTCATCATCGACC
                      ____________________________________________________________
consensus CCTCCATCAAGCGAGCTTTGCGGAGATTCAATAGCAGAAATGGAGTCCTCATCATCGACC
 
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JMFN014N17- GCCAAAAAGAAGTCACCGGAGGCGGATTCTCGTCGGAAACCTGCAGATGCCGCGAAGACG
                      ____________________________________________________________
consensus GCCAAAAAGAAGTCACCGGAGGCGGATTCTCGTCGGAAACCTGCAGATGCCGCGAAGACG
 
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JMFN014N17- CCATCAGCTGCGGAGATCGAGGAGTTCTTCTCCGCGACGGAAAAGTACGTGCAAAAAAGA
                      ____________________________________________________________
consensus CCATCAGCTGCGGAGATCGAGGAGTTCTTCTCCGCGACGGAAAAGTACGTGCAAAAAAGA
 
. : . : . : . : . : . :
rJMSF044G23+ AAAAGTACAACTACGATATTGTGAAGGATGTGCCATTGGAGGGGCGCTACCAG
JMFN014N17- TTCGCGGAAAAGTACAACTACGATATTGTGAAGGATGTGCCATTGGAGGGGCGCTACCAG
                      ____________________________________________________________
consensus TTCGCGGAAAAGTACAACTACGATATTGTGAAGGATGTGCCATTGGAGGGGCGCTACCAG
 
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rJMSF044G23+ TGGGTTCGTTTGAAGCCATAAAACCAAGTCTGGAAAATTTGTGATGATGAGGCTGG
JMFN014N17- TGGGTTCGTTTGAAGCCATAAAACCAAGTCTGGAAAATTTGTGATGATGAGGCTGGGATT
                      ____________________________________________________________
consensus TGGGTTCGTTTGAAGCCATAAAACCAAGTCTGGAAAATTTGTGATGATGAGGCTGGGATT
 
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JMFN014N17- GATGTCAGTCTAAACGATAACACGATCCGCATTGCTCTCCATCTTTACCTTTCGTCTCAG
                      ____________________________________________________________
consensus GATGTCAGTCTAAACGATAACACGATCCGCATTGCTCTCCATCTTTACCTTTCGTCTCAG
 
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JMFN014N17- ATAGTCACAGACCCACCTAATAATAGAACGAACCACTCAAATAATACATGGTACGGTCAC
                      ____________________________________________________________
consensus ATAGTCACAGACCCACCTAATAATAGAACGAACCACTCAAATAATACATGGTACGGTCAC
 
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JMFN014N17- ACTATAATTGTTTGTTTTTCTTTTTTCCCCTTTTATTTACGCGCTGCTTTGCCTGAATTA
                      ____________________________________________________________
consensus ACTATAATTGTTTGTTTTTCTTTTTTCCCCTTTTATTTACGCGCTGCTTTGCCTGAATTA
 
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JMFN014N17- TAATAAGCTGCCAAGCTAGATTATGTAATGCATGTGTACATGCATTATTCCAACTCTATC
                      ____________________________________________________________
consensus TAATAAGCTGCCAAGCTAGATTATGTAATGCATGTGTACATGCATTATTCCAACTCTATC
 
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JMFN014N17- ACACTTTTACGCAAGCAAGTCTGTTGCGTAGATCTGAGCCTATAAATCATATTGAGATTT
                      ____________________________________________________________
consensus ACACTTTTACGCAAGCAAGTCTGTTGCGTAGATCTGAGCCTATAAATCATATTGAGATTT