Contig 007519:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013P02Sequence625007519 (2)ref|XP_004252003.1|5e-62PREDICTED: thioredoxin-like 1-1, chloroplastic [Solanum lycopersicum]
JMSF042N09Sequence746015833ref|XP_004252003.1|3e-89PREDICTED: thioredoxin-like 1-1, chloroplastic [Solanum lycopersicum]765007519 (2)ref|XP_010999478.1|3e-55PREDICTED: thioredoxin-like 1-1, chloroplastic isoform X1 [Populus euphratica]

Alignment

This contig is upended


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rJMSF042N09-                                  TATGTTTATTGAGGGCTAATCTCCGATTAAAAAAGG
                      ____________________________________________________________
consensus                                     TATGTTTATTGAGGGCTAATCTCCGATTAAAAAAGG
 
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rJMSF042N09-          GAGAGAGCCCGGAGAATAGGATAGGAATGCATATTATACAACTTGTGATGGGAGATCACA
                      ____________________________________________________________
consensus             GAGAGAGCCCGGAGAATAGGATAGGAATGCATATTATACAACTTGTGATGGGAGATCACA
 
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rJMSF042N09-          GCCTGCTAATTGCTAAACTTCATCCTACAGGGGAGCACTATTAACAAGAAAATTCAATCC
                      ____________________________________________________________
consensus             GCCTGCTAATTGCTAAACTTCATCCTACAGGGGAGCACTATTAACAAGAAAATTCAATCC
 
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rJMSF042N09-          CTAAAGTCCTAAAATACACCCACTCTCCTCCTATGAAGCCGAATGGGATGGATATGCAGC
                      ____________________________________________________________
consensus             CTAAAGTCCTAAAATACACCCACTCTCCTCCTATGAAGCCGAATGGGATGGATATGCAGC
 
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rJMSF042N09-          AGTTGAAGCATATTCTGATCAGATCATCTACCAGAGGGAACGAAAGTTCGGTCATCAGTA
                      ____________________________________________________________
consensus             AGTTGAAGCATATTCTGATCAGATCATCTACCAGAGGGAACGAAAGTTCGGTCATCAGTA
 
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rJMSF042N09-          CCAGAGAGTTGCTTGATCTCCGGTGAGGCGGCTGATGGAATTGGACGCGGAAGTGGGAGT
                      ____________________________________________________________
consensus             CCAGAGAGTTGCTTGATCTCCGGTGAGGCGGCTGATGGAATTGGACGCGGAAGTGGGAGT
 
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rJMSF042N09-          CGGAATTCTGAGTGTGGATGATGAGATGGCGGTTTCCCTGCTCGTAAGGGCACAGAAACG
                      ____________________________________________________________
consensus             CGGAATTCTGAGTGTGGATGATGAGATGGCGGTTTCCCTGCTCGTAAGGGCACAGAAACG
 
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rJMSF042N09-          GGTTCTTCTGGTTTTGGTGCGTAGTTGAAGGAGAGATCCCTGTTTTCTGCTAGTGCAAGT
                      ____________________________________________________________
consensus             GGTTCTTCTGGTTTTGGTGCGTAGTTGAAGGAGAGATCCCTGTTTTCTGCTAGTGCAAGT
 
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rJMSF042N09-          AGCTCTTTCTCCTCCAAGCCCTTTGGAGGCCCCAGACCGCATCTATCTGCCCCGTATTTG
                      ____________________________________________________________
consensus             AGCTCTTTCTCCTCCAAGCCCTTTGGAGGCCCCAGACCGCATCTATCTGCCCCGTATTTG
 
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rJMSF042N09-          ACGAGCGCATCTTTGAATTTCTTAATCGTTGCGTTAGTGCAACTGAAGCTACAAACACGA
                      ____________________________________________________________
consensus             ACGAGCGCATCTTTGAATTTCTTAATCGTTGCGTTAGTGCAACTGAAGCTACAAACACGA
 
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rJMSF042N09-          CCTTCAGCTCCTCTATAGAAACGGAAAAATGGAAGAACATGTACATTAAGGCTATAACAC
JMFN013P02+                                             GAACATGTACATTAAGGCTATAACAC
                      ____________________________________________________________
consensus             CCTTCAGCTCCTCTATAGAAACGGAAAAATGGAAGAACATGTACATTAAGGCTATAACAC
 
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rJMSF042N09-          ATGGACTTGTGCTCCTCATAGTTAACCTGCAGAAACTGTATGTCTGGGTTCATCTCCGCC
JMFN013P02+           ATGGACTTGTGCTCCTCATAGTTAACCTGCAGAAACTGTATGTCTGGGTTCATCTCCGCC
                      ____________________________________________________________
consensus             ATGGACTTGTGCTCCTCATAGTTAACCTGCAGAAACTGTATGTCTGGGTTCATCTCCGCC
 
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rJMSF042N09-          AACTGGCACATCTTAGGATGGAGGGGCTTTGCAGCCACCACAACCAGGGGAAAAGAAATC
JMFN013P02+           AACTGGCACATCTTAGGATGGA-GGGCTTTGCAGCCACCACAACCAGGGGAAAAGAAATC
                      ____________________________________________________________
consensus             AACTGGCACATCTTAGGATGGAGGGGCTTTGCAGCCACCACAACCAGGGGAAAAGAAATC
 
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rJMSF042N09-          CACCACCAC                                                   
JMFN013P02+           CACCACCACCAAATTATCAGTGGCATTTGAAAGAGATTCTACGAGGTCTTGAGCACTCAC
                      ____________________________________________________________
consensus             CACCACCACCAAATTATCAGTGGCATTTGAAAGAGATTCTACGAGGTCTTGAGCACTCAC
 
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JMFN013P02+           AACCTCTTTCATGTTGGGTTGAAGCCCTTTCTCCCACCATCTTTGAGCTTTCGCAATTCC
                      ____________________________________________________________
consensus             AACCTCTTTCATGTTGGGTTGAAGCCCTTTCTCCCACCATCTTTGAGCTTTCGCAATTCC
 
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JMFN013P02+           AATGCTCATCTGTGTTCGGCCATTTCCTGGGAAAAGCAGGGTTCCGGTGGCTACTCTGCG
                      ____________________________________________________________
consensus             AATGCTCATCTGTGTTCGGCCATTTCCTGGGAAAAGCAGGGTTCCGGTGGCTACTCTGCG
 
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JMFN013P02+           ACCATAAAAATCGGTGCTCGGTGAATTCGGAGCCCCGCACGAGAGTTTCAGAGACTGAGC
                      ____________________________________________________________
consensus             ACCATAAAAATCGGTGCTCGGTGAATTCGGAGCCCCGCACGAGAGTTTCAGAGACTGAGC
 
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JMFN013P02+           ATCCGAACACGCGCGGGAGCAAACAAGAGATCCATTTGGGAAAGTACAAACTCGGTGTTG
                      ____________________________________________________________
consensus             ATCCGAACACGCGCGGGAGCAAACAAGAGATCCATTTGGGAAAGTACAAACTCGGTGTTG
 
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JMFN013P02+           ACTATAACGACGAGCCGCCGATTTATGATCGGTACTCGACGGCGAAAACACGACGCCGGC
                      ____________________________________________________________
consensus             ACTATAACGACGAGCCGCCGATTTATGATCGGTACTCGACGGCGAAAACACGACGCCGGC
 
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JMFN013P02+           CGCCTTGCTAACTACTCCCGCCATGGATGAATCGTTCGGTGATTTCCAAAATCCCGATTT
                      ____________________________________________________________
consensus             CGCCTTGCTAACTACTCCCGCCATGGATGAATCGTTCGGTGATTTCCAAAATCCCGATTT
 
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JMFN013P02+           CGAGAAAGTTGAGAATTGAAAAAAAAATTGTTTTCCGATAAAGAAAGAAAGCTATAACCC
                      ____________________________________________________________
consensus             CGAGAAAGTTGAGAATTGAAAAAAAAATTGTTTTCCGATAAAGAAAGAAAGCTATAACCC