| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012E07 | Sequence | 490 | 007503 (10) | ref|XP_009335490.1| | 7e-68 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretsc | 675 | 007503 (10) | ref|XP_009804090.1| | 2e-61 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana sylvestri |
| JMFF040G01 | Sequence | 486 | 007503 (10) | ref|XP_009335490.1| | 8e-48 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretsc | 715 | 007503 (10) | ref|XP_009623992.1| | 1e-50 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana tomentosi |
| JMFF049L20 | Sequence | 614 | 007503 (10) | ref|XP_006304215.1| | 2e-69 | hypothetical protein CARUB_v10010325mg [Capsella rubella] gb|EOA37113.1| hypothe | |||||
| JMFN003A18 | Sequence | 627 | 007503 (10) | ref|XP_009623992.1| | 1e-71 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana tomentosi | |||||
| JMFN004B15 | Sequence | 627 | 007503 (10) | ref|XP_009623992.1| | 5e-72 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana tomentosi | |||||
| JMFN017A20 | Sequence | 610 | 007503 (10) | ref|XP_009623992.1| | 1e-71 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana tomentosi | |||||
| JMFN019H03 | Sequence | 359 | 007503 (10) | ref|XP_004232469.1| | 1e-32 | PREDICTED: V-type proton ATPase subunit c2 [Solanum lycopersicum] ref|XP_0042383 | |||||
| JMFN035G07 | Sequence | 623 | 007503 (10) | ref|XP_009623992.1| | 6e-72 | PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Nicotiana tomentosi | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF040G01- TNNTTATAGTAACA
____________________________________________________________
consensus TNNTTATAGTAACA
. : . : . : . : . : . :
rJMFF040G01- CTGAACAGGTTCATACACCACCATGCATTCATGCAATGAGTAAAATAAAGTAGGAATCAA
____________________________________________________________
consensus CTGAACAGGTTCATACACCACCATGCATTCATGCAATGAGTAAAATAAAGTAGGAATCAA
. : . : . : . : . : . :
rJMFF040G01- ATAAATATCATAGGTGTACAGATCAGAGCTCAAAAGGGGGGAAAAAGGGTTGTACATAAT
rJMFF012E07- ATCATAGGTGTACAGATCAGAGCTCAAAAGGGGGGAAAAAGGGTTGTACATAAT
____________________________________________________________
consensus ATAAATATCATAGGTGTACAGATCAGAGCTCAAAAGGGGGGAAAAAGGGTTGTACATAAT
. : . : . : . : . : . :
rJMFF040G01- TCAGAAACGATATATAATAACCCAAAAGTACTCGCTAAAGGGAAAAGACCAGTGACTGGC
rJMFF012E07- TCAGAAACGATATATAATAACCCAAAAGTACTCGCTAAAGGGAAAAGACCAGTGACTGGC
____________________________________________________________
consensus TCAGAAACGATATATAATAACCCAAAAGTACTCGCTAAAGGGAAAAGACCAGTGACTGGC
. : . : . : . : . : . :
rJMFF040G01- TTCATAATTAAGCTTATTCCTTATGACTCTTAATAGTGCCAGAATGAAGAACGACAACAA
rJMFF012E07- TTCATAATTAAGCTTATTCCTTATGACTCTTAATAGTGCCAGAATGAAGAACGACAACAA
JMFN035G07+ CCAGAATGAAGAACGACAACAA
JMFN004B15+ CCAGAATGAAGAACGACAACAA
____________________________________________________________
consensus TTCATAATTAAGCTTATTCCTTATGACTCTTAATAGTGCCAGAATGAAGAACGACAACAA
. : . : . : . : . : . :
rJMFF040G01- ACCTCAATAGCTTCTCGTACGTGCTTCATAAAAATTGACTTTCTACCACAGCCTTCTAAG
rJMFF012E07- ACCTCAATAGCTTCTCGTACGTGCTTCATAAAAATTGACTTTCTACCACAGCCTTCTAAG
JMFN035G07+ ACCTCAATAGCTTCTCGTACGTGCTTCATAAAAATTGACTTTCTACCACAGCCTTCTAAG
JMFN019H03+ TCGTACGTGCTTCATAAAAATTGACTTTCTACCACAGCCTTCTAAG
JMFN004B15+ ACCTCAATAGCTTCTCGTACGTGCTTCATAAAAATTGACTTTCTACCACAGCCTTCTAAG
JMFN017A20+ AGCCTTTTAAG
JMFN003A18+ ATTGACTTTCTACCACAGCCTTCTAAG
____________________________________________________________
consensus ACCTCAATAGCTTCTCGTACGTGCTTCATAAAAATTGACTTTCTACCACAGCCTTCTAAG
. : . : . : . : . : . :
rJMFF040G01- GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
rJMFF012E07- GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
JMFN035G07+ GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
JMFF049L20+ TAGACTGCCCAGCTCGAGAAGACAAGA
JMFN019H03+ GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
JMFN004B15+ GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
JMFN017A20+ GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
JMFN003A18+ GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
____________________________________________________________
consensus GACATAAATCATATCCTCCTTTTTACTCTGCTCTAGACTGCCCAGCTCGAGAAGACAAGA
. : . : . : . : . : . :
rJMFF040G01- TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
rJMFF012E07- TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFN035G07+ TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFF049L20+ TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFN019H03+ TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFN004B15+ TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFN017A20+ TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFF012E07+ GCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
JMFN003A18+ TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
____________________________________________________________
consensus TAATGCCGACGATGAGACCATAAAGGGCCAAAGCTTCAGCAAAAATGAGAATAAGGATCA
. : . : . : . : . : . :
rJMFF040G01- TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
rJMFF012E07- TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFN035G07+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFF040G01+ CCGGCATCGCCAACGATTC
JMFF049L20+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFN019H03+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFN004B15+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFN017A20+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFF012E07+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
JMFN003A18+ TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
____________________________________________________________
consensus TTCCAACAAAAAGTTTTGGCTGCTGTGCATTAGCCCTGACACCGGCATCGCCAACGATTC
. : . : . : . : . : . :
rJMFF040G01- CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
rJMFF012E07- CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFN035G07+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFF040G01+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFF049L20+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFN019H03+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFN004B15+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFN017A20+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFF012E07+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
JMFN003A18+ CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
____________________________________________________________
consensus CGATGGCCATTCCGGCAGAGAGTCCGGCGAGGCCACAAGCGAGACCGGAAGAGAGATGTG
. : . : . : . : . : . :
rJMFF040G01- CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
rJMFF012E07- CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFN035G07+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFF040G01+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFF049L20+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFN019H03+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFN004B15+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFN017A20+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFF012E07+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
JMFN003A18+ CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
____________________________________________________________
consensus CATATCCATCGAATAGGTAGTAAGACTTGGTTTTGGGGTTAATCCCAGTACTGATGATCA
. : . : . : . : . : . :
rJMFF040G01- CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
rJMFF012E07- CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFN035G07+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFF040G01+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFF049L20+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFN019H03+ CAGCAATAATCAA
JMFN004B15+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFN017A20+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFF012E07+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
JMFN003A18+ CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
____________________________________________________________
consensus CAGCAATAATCAATCCGTAAATACCAAGCACACCAGCCATAACCACCGGCACGATCGACT
. : . : . : . : . : . :
rJMFF040G01- TCATCACAAGCTCCGGNCTCATCACTCCCATCGACGCCACT
rJMFF012E07- TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFN035G07+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFF040G01+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFF049L20+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFN004B15+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFN017A20+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFF012E07+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
JMFN003A18+ TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
____________________________________________________________
consensus TCATCACAAGCTCCGGCCTCATCACTCCCATCGACGCCACTCCGACGCCACTCTTCGCCG
. : . : . : . : . : . :
rJMFF012E07- TTCCATAGGCTGCTCCCATAC
JMFN035G07+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
JMFF040G01+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
JMFF049L20+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
JMFN004B15+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
JMFN017A20+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
JMFF012E07+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
JMFN003A18+ TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
____________________________________________________________
consensus TTCCATAGGCTGCTCCCATACAGGAGAAGACGAGAGCGGCAGCGGCGCCGAGGAAGCCGA
. : . : . : . : . : . :
JMFN035G07+ AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTGTTCGGATCTTTTGATGGG
JMFF040G01+ AGAAGGGAGCAGTTTCATCGTCGCTGAAAGTCGAAGACATTG
JMFF049L20+ AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTG
JMFN004B15+ AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTGTTCGGATCTTTTGATGGG
JMFN017A20+ AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTGTTCGGATCTTTTGATGGG
JMFF012E07+ AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTGTTCGGATCTTTTGATGGG
JMFN003A18+ AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTGTTCGGATCTTTTGATGGG
____________________________________________________________
consensus AGAAGGGAGCAGTTTCATCGCCGCTGAAAGTCGAAGACATTGTTCGGATCTTTTGATGGG
. : . : . : . : . : . :
JMFN035G07+ A
JMFN004B15+ ATTTG
JMFN017A20+ ATTTGGGATCTGAGATTTAGCGTCTGAACTCTGAACAGAGAGAGAGGTCTTGAGTTTTG
JMFF012E07+ ATTTGGGATCTGAGATTTAGCGTCTGAACTCTGAAC
JMFN003A18+ ATTTGGGATCTGAGATTTAGCGTCTGAACTCTGAACAGAGAGAGAGGTCTTGAGTTTTGG
____________________________________________________________
consensus ATTTGGGATCTGAGATTTAGCGTCTGAACTCTGAACAGAGAGAGAGGTCTTGAGTTTTGG