Contig 007498:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013N02Sequence581007498 (2)gb|AFP93559.1|9e-73cellulose synthase A1 [Neolamarckia cadamba]683023328dbj|BAG06271.1|4e-69cellulose synthase Z811 [Zinnia elegans]
JMFF051G19Sequence627007498 (2)ref|XP_009777624.1|5e-92PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Nicotiana sy

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+                                                                      G
JMFF051G19+                                            GACATGGATAGGGGATGGATTCTTCTG
                      ____________________________________________________________
consensus                                              GACATGGATAGGGGATGGATTCTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           TGAAGAGATGATCCTTGCATCTGCTGATCTCCATTAGGGTGACTTGATATTTGGAATTCC
JMFF051G19+           TGAAGAGATGATCCTTGCATCTGCTGATCTCCATTAGGGTGACTGNATATTTGGAATTCC
                      ____________________________________________________________
consensus             TGAAGAGATGATCCTTGCATCTGCTGATCTCCATTAGGGTGACTTGATATTTGGAATTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           CCACTTACCGGATGAGAACGCATGCCTGCTATGACAGGAGGGTATTGTACAGTGTCCTCA
JMFF051G19+           CCACTTACCGGATGAGAACGCATGCCTGCTATGACAGGAGGGTATTGTACAGTGTCCTCA
                      ____________________________________________________________
consensus             CCACTTACCGGATGAGAACGCATGCCTGCTATGACAGGAGGGTATTGTACAGTGTCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           TCTTCTGGTCCTCTTCCATAGCTCATCTTACCATGAAGCATTGTTTCAACAATGTTTCTG
JMFF051G19+           TCTTCTGGTCCTCTTCCATAGCTCATCTTACCATGAAGCATTGTTTCAACAATGTTTCTG
                      ____________________________________________________________
consensus             TCTTCTGGTCCTCTTCCATAGCTCATCTTACCATGAAGCATTGTTTCAACAATGTTTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           TTCGTATTTTTCTCATCATCAATCTTAAATTCATGCTCGATGTCATCAATATCTTCCTCA
JMFF051G19+           TTCGTATTTTTCTCATCATCAATCTTAAATTCATGCTCGATGTCATCAATATCTTCCTCA
                      ____________________________________________________________
consensus             TTCGTATTTTTCTCATCATCAATCTTAAATTCATGCTCGATGTCATCAATATCTTCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           TCTTCATCTCCTTCCACCCTTGGACTCCCTTTGAGGCGTTTGTATCTGGTCTTGCACTGG
JMFF051G19+           TCTTCATCTCCTTCCACCCTTGGACTCCCTTTGAGGCGTTTGTATCTGGTCTTGCACTGG
                      ____________________________________________________________
consensus             TCTTCATCTCCTTCCACCCTTGGACTCCCTTTGAGGCGTTTGTATCTGGTCTTGCACTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           GGGCAGTGTTGAGTTCCTTCTCTTCTCTCATACTCATAGCAT-GGCGGCAAGCCGGAAAA
JMFF051G19+           GGGCAGTGTTGAGTTCCTTCTCTTCTCTCATACTCATAGCATGGGCGGCAAGCCGGAAAA
                      ____________________________________________________________
consensus             GGGCAGTGTTGAGTTCCTTCTCTTCTCTCATACTCATAGCATGGGCGGCAAGCCGGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           CCACACTCATTGCATGCCACAAACAGATCTCCATCCACTGTTAGCCCGACTTCATCTCCA
JMFF051G19+           CCACACTCATTGCATGCCACAAACAGATCTCCATCCACTGTTAGCCCGACTTCATCTCCA
                      ____________________________________________________________
consensus             CCACACTCATTGCATGCCACAAACAGATCTCCATCCACTGTTAGCCCGACTTCATCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           CATATCTCACAAACTTGTCCAGTCAAATCCTTCAATGCCTTAGGCTCTTCATGGCCATGA
JMFF051G19+           CATATCTCACAAACTTGTCCAGTCAAATCCTTCAATGCCTTAGGCTCTTCATGGCCATGA
                      ____________________________________________________________
consensus             CATATCTCACAAACTTGTCCAGTCAAATCCTTCAATGCCTTAGGCTCTTCATGGCCATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           ATGACAACCAGCTCATTTCGATTATGAGAACCAGCAACGAGCCCCGCGCTGGCTTCCATG
JMFF051G19+           ATGACAACCAGCTCATTTCGATTATGAGAACCAGCAACGAGCCCCGCGCTGGCTTCCATG
                      ____________________________________________________________
consensus             ATGACAACCAGCTCATTTCGATTATGAGAACCAGCAACGAGCCCCGCGCTGGCTTCCATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF013N02+           GTAGAGAATGGAGGAGAAGGAGGAGGTTTGGGTGAAAGAAT                   
JMFF051G19+           GTAGAGAATGGAGGAGAAGGAGGAGGTTTGGGTGAATGAATGGTGAATGCTGAGAATGGT
                      ____________________________________________________________
consensus             GTAGAGAATGGAGGAGAAGGAGGAGGTTTGGGTGAATGAATGGTGAATGCTGAGAATGGT