| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033L19 | Sequence | 554 | 007491 (4) | gb|AFK44603.1| | 6e-85 | unknown [Lotus japonicus] | 747 | 012381 (7) | ref|XP_009800558.1| | 5e-23 | PREDICTED: casein kinase I isoform delta-like, partial [Nicotiana sylvestris] |
| JMFF037C11 | Sequence | 551 | 007491 (4) | ref|XP_011078008.1| | 1e-63 | PREDICTED: casein kinase I isoform delta-like [Sesamum indicum] | 677 | 012381 (7) | ref|XP_009800558.1| | 2e-16 | PREDICTED: casein kinase I isoform delta-like, partial [Nicotiana sylvestris] |
| JMFF050G12 | Sequence | 615 | 007491 (4) | gb|AFK44603.1| | 5e-87 | unknown [Lotus japonicus] | 560 | 012381 (7) | ref|XP_009800558.1| | 6e-05 | PREDICTED: casein kinase I isoform delta-like, partial [Nicotiana sylvestris] |
| JMSF049L19 | Sequence | 677 | 007491 (4) | emb|CDP03143.1| | 1e-121 | unnamed protein product [Coffea canephora] | 724 | 012381 (7) | ref|XP_009800558.1| | 6e-55 | PREDICTED: casein kinase I isoform delta-like, partial [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF049L19+ TCCA
____________________________________________________________
consensus TCCA
. : . : . : . : . : . :
JMSF049L19+ GTCAAATTTTTGTTCTCCCTGTAAGGAATGTGTTGGTGAGTTGAAGTGTCTCGGTACTTC
____________________________________________________________
consensus GTCAAATTTTTGTTCTCCCTGTAAGGAATGTGTTGGTGAGTTGAAGTGTCTCGGTACTTC
. : . : . : . : . : . :
JMSF049L19+ TTAGCCAGACCAAAGTCAATTATGTAGACCTGATTTGCACGTCTTCCCAAGCCCATAAGA
____________________________________________________________
consensus TTAGCCAGACCAAAGTCAATTATGTAGACCTGATTTGCACGTCTTCCCAAGCCCATAAGA
. : . : . : . : . : . :
JMSF049L19+ AAATTGTCAGGCTTGATATCTCGATGCAAAAATGACTTAGAGTGTACAAATTCAACACGA
JMFF033L19+ TCGATGCAAAAATGACTTAGAGTGTACAAATTCAACACGA
JMFF037C11+ TCGATGCAAAAATGACTTAGAGTGTACAAATTCAACACGA
JMFF050G12+ TCTCGATGCAAAAATGACTTAGAGTGTACAAATTCAACACGA
____________________________________________________________
consensus AAATTGTCAGGCTTGATATCTCGATGCAAAAATGACTTAGAGTGTACAAATTCAACACGA
. : . : . : . : . : . :
JMSF049L19+ TTGATCATTTGATCTGCAAGCATCAGAACTGTCTTCAAAGAAAGCTTCCTACTACAAAAG
JMFF033L19+ TTGATCATTTGATCTGCAAGCATCAGAACTGTCTTCAAAGAAAGCTTCCTACTACAAAAG
JMFF037C11+ TTGATCATTTGATCTGCAAGCATCAGAACTGTCTTCAAAGAAAGCTTCCTACTACAAAAG
JMFF050G12+ TGNATCATTGATTCTGCAAGCATCAGAACTGTCTTCAAAGAAAGCTTCCTACTACAAAAG
____________________________________________________________
consensus TTGATCATTTGATCTGCAAGCATCAGAACTGTCTTCAAAGAAAGCTTCCTACTACAAAAG
. : . : . : . : . : . :
JMSF049L19+ TTAAATAGATCTTCAAGACTAGGTCCAAGCAAGTCCATGACCAGAACATTGTAATCCCCT
JMFF033L19+ TTAAATAGATCTTCAAGACTAGGTCCAAGCAAGTCCATGACCAGAACATTGTAATCCCCT
JMFF037C11+ TTAAATAGATCTTCAAGACTAGGTCCAAGCAAGTCCATGACCAGAACATTGTAATCCCCT
JMFF050G12+ TTAAATAGATCTTCAAGACTAGGTCCAAGCAAGTCCATGACCAGAACATTGTAATCCCCT
____________________________________________________________
consensus TTAAATAGATCTTCAAGACTAGGTCCAAGCAAGTCCATGACCAGAACATTGTAATCCCCT
. : . : . : . : . : . :
JMSF049L19+ TCCA-CCCCAAACCATCTCACGTTGGGTATTCCAGTTCCTCCTTGTAAAATTCTGTATAA
JMFF033L19+ TCCA-CCCCAAACCATCTCACGTTGGGTATTCCAGTTCCTCCTTGTAAAATTCTGTATAA
JMFF037C11+ TCCACCCCCAAACCATCTCACGTTGGGTATTCCAGTTCCTCCTTGTAAAATTCTGTATAA
JMFF050G12+ TCCA-CCCCAAACCATCTCACGTTGGGTATTCCAGTTCCTCCTTGTAAAATTCTGTATAA
____________________________________________________________
consensus TCCA-CCCCAAACCATCTCACGTTGGGTATTCCAGTTCCTCCTTGTAAAATTCTGTATAA
. : . : . : . : . : . :
JMSF049L19+ CTTCGACTCATACAGTAACTGAGGATGTTTTGTCTTGACATTTTCGAGCTTAATTGCCAC
JMFF033L19+ CTTCGACTCATACAGTAACTGAGGATGTTTTGTCTTGACATTTTCGAGCTTAATTGCCAC
JMFF037C11+ CTTCGACTCATACAGTAACTGAGGATGTTTTGTCTTGACATTTTCGAGCTTAATTGCCAC
JMFF050G12+ CTTCGACTCATACAGTAACTGAGGATGTTTTGTCTTGACATTTTCGAGCTTAATTGCCAC
____________________________________________________________
consensus CTTCGACTCATACAGTAACTGAGGATGTTTTGTCTTGACATTTTCGAGCTTAATTGCCAC
. : . : . : . : . : . :
JMSF049L19+ TTCCTCATTAGTCTGTATATTAGTACCGAGATAGATCTCTCCGAACGATCCGCTGCCGAT
JMFF033L19+ TTCCTCATTAGTCTGTATATTAGTACCGAGATAGATCTCTCCGAACGATCCGCTGCCGAT
JMFF037C11+ TTCCTCATTAGTCTGTATATTAGTACCGAGATAGATCTCTCCGAACGATCCGCTGCCGAT
JMFF050G12+ TTCCTCATTAGTCTGTATATTAGTACCGAGATAGATCTCTCCGAACGATCCGCTGCCGAT
____________________________________________________________
consensus TTCCTCATTAGTCTGTATATTAGTACCGAGATAGATCTCTCCGAACGATCCGCTGCCGAT
. : . : . : . : . : . :
JMSF049L19+ TTTTCGTCCAAGTCGGTACTTGTTACCAACACGGGGCTCCATCAACAGAAGGAGAAAGCA
JMFF033L19+ TTTTCGTCCAAGTCGGTACTTGTTACCAACACGGGGCTCCATCAACAGAAGGAGAAAGCA
JMFF037C11+ TTTTCGTCCAAGTCGGTACTTGTTACCAACACGGGGCTCCATCAACAGAAGGAGAAAGCA
JMFF050G12+ TTTTCGTCCAAGTCGGTACTTGTTACCAACACGGGGCTCCATCAACAGAAGGAGAAAGCA
____________________________________________________________
consensus TTTTCGTCCAAGTCGGTACTTGTTACCAACACGGGGCTCCATCAACAGAAGGAGAAAGCA
. : . : . : . : . : . :
JMSF049L19+ CAAAACACAAGCAAGTAAGCTTGTTCTTTGTAGCCAGAGATCTAGGGTTTATTGCTTGTT
JMFF033L19+ CAAAACACAAGCAAGTAAGCTTGTTCTTTGTAGCCAGAGATCTAGGGTTTATTGCTTGTT
JMFF037C11+ CAAAACACAAGCAAGTAAGCTTGTTCTTTGTAGCCAGAGATCTAGGGTTTATTGCTTGTT
JMFF050G12+ CAAAACACAAGCAAGTAAGCTTGTTCTTTGTAGCCAGAGATCTAGGGTTTATTGCTTGTT
____________________________________________________________
consensus CAAAACACAAGCAAGTAAGCTTGTTCTTTGTAGCCAGAGATCTAGGGTTTATTGCTTGTT
. : . : . : . : . : . :
JMSF049L19+ TGTTGATTCTTCTGGTTTTATCCCAACCAAACTAGGGTTAGGTTGAAGCAGGAGAGAAAT
JMFF033L19+ TGTTGATTCTTCTGGTTTTATCCCAACCAAACTAGGGTTAGGTTGAAGCAGGAGAGAAAT
JMFF037C11+ TGTTGATTCTTCTGGTTTTATCCCAACCAAACTAGGGTTAGGTTGAAGCAGGAGAGAAAT
JMFF050G12+ TGTTGATTCTTCTGGTTTTATCCCAACCAAACTAGGGTTAGGTTGAAGCAGGAGAGAAAT
____________________________________________________________
consensus TGTTGATTCTTCTGGTTTTATCCCAACCAAACTAGGGTTAGGTTGAAGCAGGAGAGAAAT
. : . : . : . : . : . :
JMSF049L19+ GAGAGAGAAAGAG
JMFF033L19+ GAGAGAGAAAGAGAGTTTTCATGTGGTT
JMFF037C11+ GAGAGAGAAAGAGAGTTTTCATGTGGTT
JMFF050G12+ GAGAGAGAAAGAGAGTTTTCATGTGGTTTCTCTCTCTATATTTATACATATATCTCGGAT
____________________________________________________________
consensus GAGAGAGAAAGAGAGTTTTCATGTGGTTTCTCTCTCTATATTTATACATATATCTCGGAT