Contig 007490:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF050B01-                                                                CCTTAT
                      ____________________________________________________________
consensus                                                                   CCTTAT
 
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rJMFF050B01-          GGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXXXX
                      ____________________________________________________________
consensus             GGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNN
 
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rJMFF050B01-          XAAACAAACGAAAACGATTTTTATTCATATCATCAATCAGAACATTACAAACAACAAGAG
rJMFF025D06-                               TATTCATATCATCAATCAGAACATTACAAACAACAAGAG
                      ____________________________________________________________
consensus             NAAACAAACGAAAACGATTTTTATTCATATCATCAATCAGAACATTACAAACAACAAGAG
 
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rJMFF050B01-          GGGAAGAGACTCACTCCTTAAGTAAAAACAGACTCTCTAGCTGCTAACAAATGAACAGCC
rJMFF025D06-          GGGAAGAGACTCACTCCTTAAGTAGAAACAGACTCTCTAGCTGCTAACAAATGAACAGCC
                      ____________________________________________________________
consensus             GGGAAGAGACTCACTCCTTAAGTAGAAACAGACTCTCTAGCTGCTAACAAATGAACAGCC
 
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rJMFF050B01-          TTATTCACTGAACGTTTAATAAAAGATATACCAATCTGAGTAAACCTACTCATCAGATAT
rJMFF025D06-          TTATTCACTGAACGTTTAATAAAAGATATACCAATCTGAGTAAACCTACTCATCAGATAT
rJMFF006A21-                                          AATCTGAGTAAACCTACTCATCAGATAT
                      ____________________________________________________________
consensus             TTATTCACTGAACGTTTAATAAAAGATATACCAATCTGAGTAAACCTACTCATCAGATAT
 
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rJMFF050B01-          ATGACAAAAGCAAAGAAAAACCATAGTTTGAGACAAAGCCTTGCACAACCACCTTGGCAT
rJMFF025D06-          ATGACAAAAGCAAAGAAAAACCATAGTTTGAGACAAAGCCTTGCACAACCACCTTGGCAT
rJMFF006A21-          ATGACAAAAGCAAAGAAAAACCATAGTTTGAGACAAAGCCTTGCACAACCACCTTGGCAT
                      ____________________________________________________________
consensus             ATGACAAAAGCAAAGAAAAACCATAGTTTGAGACAAAGCCTTGCACAACCACCTTGGCAT
 
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rJMFF050B01-          CAGATTCCAAAAAAA                                             
rJMFF025D06-          CAGATTCCAAAAAAAAAACAAAACAGAAAAAGCATTATATCTGTTACTGAAAGANAACAA
rJMFF006A21-          CAGATTCCAAAAAAAAAACAAAACAGAAAAAGCATTATATCTGTTACTGAAAGAGAACAA
                      ____________________________________________________________
consensus             CAGATTCCAAAAAAAAAACAAAACAGAAAAAGCATTATATCTGTTACTGAAAGAGAACAA
 
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rJMFF025D06-          AAAATCATTCANATTCAGCTTCANAATTTTGTTTCACTTTCAGCATACACCTCACTAGGG
rJMFF006A21-          AAAATCATTCANATTCAGCTTCANAATTTTGTTTCACTTTCAGCATACACCTCACTAGGG
                      ____________________________________________________________
consensus             AAAATCATTCANATTCAGCTTCANAATTTTGTTTCACTTTCAGCATACACCTCACTAGGG
 
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rJMFF025D06-          TCAGNGCTTCTTTGTTCACCCTCTTCTTATCTCTTCTGAAGCCTTTGCTGCCTCTAAGCG
rJMFF006A21-          TCAGNGCTTCTTTGTTCACCCTCTTCTTATCTCTTCTGAAGCCTTTGCTGCCTCTAAGCG
                      ____________________________________________________________
consensus             TCAGNGCTTCTTTGTTCACCCTCTTCTTATCTCTTCTGAAGCCTTTGCTGCCTCTAAGCG
 
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rJMFF025D06-          AGCGCTGACTGCTTCCCACGATACAAGGTTCTCCATAAAAATANAAATGTAGTCGGGGCG
rJMFF006A21-          AGCGCTGACTGCTTCCCACGATACAAGGTTCTCCATAAAAATANAAATGTAGTCGGGGCG
                      ____________________________________________________________
consensus             AGCGCTGACTGCTTCCCACGATACAAGGTTCTCCATAAAAATANAAATGTAGTCGGGGCG
 
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rJMFF025D06-          TCNATTCTGGTAGTCTAGGTAGTAAGCATGCTCCCAAACATCTATTGTTAGGAGTGGANA
rJMFF006A21-          TCGATTCTGGTAGTCTAGGTAGTAAGCATGCTCCCAAACATCTATTGTTAGGAGTGGANA
JMFS106A10+                                       TGCTCCCAAACATCTATTGTTAGGAGTGGAGA
                      ____________________________________________________________
consensus             TCGATTCTGGTAGTCTAGGTAGTAAGCATGCTCCCAAACATCTATTGTTAGGAGTGGAGA
 
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rJMFF025D06-          GTAATCCAANACAANAGGGTTTACAGCATTGGGAGTTTTAACAATTACAAGCTTCTTGTC
rJMFF006A21-          GTAATCCAAGACAANAGGGTTTACAGCATTGGGAGTTTTAACAATTACAAGCTTCTTGTC
JMFS106A10+           GTAATCCAAGACAAGAGGGTTTACAGCATTGGGAGTTTTAACAATTACAAGCTTCTTGTC
                      ____________________________________________________________
consensus             GTAATCCAAGACAAGAGGGTTTACAGCATTGGGAGTTTTAACAATTACAAGCTTCTTGTC
 
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rJMFF025D06-          TTCGTCGGGATTTCCCACATTAAGTTTGTTGGCCTTGTATGCAAGCCATGCCCAGCCAGA
rJMFF006A21-          TTCGTCGGGATTTCCCACATTAAGTTTGTTGGCCTTGTATGCAAGCCATGCCCAGCCANA
JMFF006A21+                                             TTGTATGCAAGCCATGCCCAGCCAGA
JMFF025D06+                 GGGATTTCCCACATTAAGTTTGTTGGCCTTGTATGCAAGCCATGCCCAGCCAGA
JMFS106A10+           TTCGTCGGGATTTCCCACATTAAGTTTGTTGGCCTTGTATGCAAGCCATGCCCAGCCAGA
JMFF050B01+                                                  TGCAAGCCATGCCCAGCCAGA
                      ____________________________________________________________
consensus             TTCGTCGGGATTTCCCACATTAAGTTTGTTGGCCTTGTATGCAAGCCATGCCCAGCCAGA
 
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rJMFF025D06-          GCCAAATTGTGTTGCCGCAGCAACCTTGAACTCCTTCATAAATGTCTCAAACGAACCGAA
rJMFF006A21-          GCCAAATTGTGTTGCCGCAGCAGCCTTGAACTCCTTCATAAATGTCTCAAACGAACCGAA
JMFF006A21+           GCCAAATTGTGTTGCCGCAGCAGCCTTGAACTCCTTCATAAATGTCTCAAACGAACCGAA
JMFF025D06+           GCCAAATTGTGTTGCCGCAGCAACCTTGAACTCCTTCATAAATGTCTCAAACGAACCGAA
JMFS106A10+           GCCAAATTGTGTTGCCGCAGCAGCCTTGAACTCCTTCATAAATGTCTCAAACGAACCGAA
JMFF050B01+           GCCAAATTGTGTTGCCGCAGCAGCCTGAACTCCTTTCATAAATGTCTCAAACGAACCGAA
                      ____________________________________________________________
consensus             GCCAAATTGTGTTGCCGCAGCAGCCTTGAACTCCTTCATAAATGTCTCAAACGAACCGAA
 
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rJMFF025D06-          ATCTC-TATTGA                                                
rJMFF006A21-          ATCTC-TATTGATTAGCTCGAGAAGTTCACCTGATGGCTCCCCTCCCCCACCCGGTTTCA
JMFF006A21+           ATCTC-TATTGATTAGCTCGAGAAGTTCACCTGATGGCTCCCCTCCCCCACCCGGTTTCA
JMFF025D06+           ATCTCTTATTGATTAGCTCGAGAAGTTCACCTGATGGCTCCCCTCCCCCACCCGGTTTCA
JMFS106A10+           ATCTC-TATTGATTAGCTCGAGAAGTTCACCTGATGGCTCCCCTCCCCCACCCGGTTTCA
JMFF050B01+           ATCTC-TATTGATTAGCTCGAGAAGTTCACCTGATGGCTCCCCTCCCCCACCCGGTTTCA
                      ____________________________________________________________
consensus             ATCTC-TATTGATTAGCTCGAGAAGTTCACCTGATGGCTCCCCTCCCCCACCCGGTTTCA
 
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rJMFF006A21-          TAGACTCCCAGAAGAAAGTATGATTCCAAGCCTGTGCAGCATTGTTGAATGCAGGAAGAA
JMFF006A21+           TAGACTCCCAGAAGAAAGTATGATTCCAAGCCTGTGCAGCATTGTTGAATGCAGGAAGAA
JMFF025D06+           TAGACTCCCAGAAGAAAGTATGATTACAAGCCTGTGCAGCATTGTTGAATGCAGGAAGAA
JMFS106A10+           TAGACTCCCAGAAGAAAGTATGATTCCAAGCCTGTGCAGCATTGTTGAATGCAGGAAGAA
JMFF050B01+           TAGACTCCCAGAAGAAAGTATGATTCCAAGCCTGTGCAGCATTGTTGAATGCAGGAAGAA
                      ____________________________________________________________
consensus             TAGACTCCCAGAAGAAAGTATGATTCCAAGCCTGTGCAGCATTGTTGAATGCAGGAAGAA
 
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rJMFF006A21-          AATCACCATTGTTGTATGTGGCCAATACAATGTCTTCTAATGATACCCCATCCGGTTCGG
JMFF006A21+           AATCACCATTGTTGTATGTGGCCAATACAATGTCTTCTAATGATACCCCATCCGGTTCGG
JMFF025D06+           AATCACCATTGTTGTATGTGGCCAATACAATGTCTTCTAATGATACCCCATCCAGTTCGG
JMFS106A10+           AATCACCATTGTTGTATGTGGCCAATACAATGTCTTCTAATGATACCCCATCCAGTTCGG
JMFF050B01+           AATCACCATTGTTGTATGTGGCCAATACAATGTCTTCTAATGATACCCCATCAAGTTCGG
                      ____________________________________________________________
consensus             AATCACCATTGTTGTATGTGGCCAATACAATGTCTTCTAATGATACCCCATCCGGTTCGG
 
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rJMFF006A21-          TTCCTACGATCTGCTTG                                           
JMFF006A21+           TTCCTACGATCTGCTTGTTTAAGTTGTCGACATAAGCCCTGTGATGTTTTCCCCAGTGGT
JMFF025D06+           TTCCTACGATCTGCTTGTTTAAGTTGTCGACATAAGCCCTGTGATGTTTTCCCCAGTGGT
JMFS106A10+           TTCCTACGATCTGCTTGTTTAAGTTGTCGACATAAGCCCTGTGATGTTTTCCCCAGTGGT
JMFF050B01+           TTCCTACGATCTGCTTGTTTAAGTTGTCGACATAAGCCCTGTGATGTTTTCCCCAGTGGT
                      ____________________________________________________________
consensus             TTCCTACGATCTGCTTGTTTAAGTTGTCGACATAAGCCCTGTGATGTTTTCCCCAGTGGT
 
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JMFF006A21+           ATTCAAATGTTTGGCGACTCATATGAGGCTCCAGTGCATCCAGTGGATATGGTGGAGGCT
JMFF025D06+           ATTCAAATGTTTGGCGACTCATATGAGGCTCCAGTGCATCCAGTGGATATGGTGGAGGCT
JMFS106A10+           ATTCAAATGTTTGGCGACTCATATGAGGCTCCAGTGCATCCAGTGGATATGGTGGAGGCT
JMFF050B01+           ATTCAAATGTTTGGCGACTCATATGAGGCTCCAGTGCATCCAGTGGATATGGTGGAGGCT
                      ____________________________________________________________
consensus             ATTCAAATGTTTGGCGACTCATATGAGGCTCCAGTGCATCCAGTGGATATGGTGGAGGCT
 
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JMFF006A21+           TTAGCTCAAGTGCTACTTTCTCCATCTTTCCAGATTCGAAGTTATGGCTTGAGCTCACCG
JMFF025D06+           TTAGCTCAAGTGCT                                              
JMFS106A10+           TTAGCTCAAGTGCTACTTTCTCCATCTTTCCAGATTCGAAGTTATGGCTTGAGCTCACCG
JMFF050B01+           TTAGCTCAAGTGCTACTTTCTCCATCTTTCCAGATTCGAAGTTATGGCTTGAGCTCACCG
                      ____________________________________________________________
consensus             TTAGCTCAAGTGCTACTTTCTCCATCTTTCCAGATTCGAAGTTATGGCTTGAGCTCACCG
 
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JMFF006A21+           GAAAAC                                                      
JMFS106A10+           GAAAAC                                                      
JMFF050B01+           GAAAACCTGCGAAACGGACAGAACCCATCAGCTATGCTGCATATATAATATTTCATTAAT
                      ____________________________________________________________
consensus             GAAAACCTGCGAAACGGACAGAACCCATCAGCTATGCTGCATATATAATATTTCATTAAT
 
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JMFF050B01+           ACAGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGGAGACTTTGGCGAGAAAAG
                      ____________________________________________________________
consensus             ACAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGGAGACTTTGGCGAGAAAAG
 
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JMFF050B01+           AAGGCAGACGAAAGAGAATTTGCAGAAACTGTAATCTGATGTTTGTCTTTGCGAATGAGT
                      ____________________________________________________________
consensus             AAGGCAGACGAAAGAGAATTTGCAGAAACTGTAATCTGATGTTTGTCTTTGCGAATGAGT