Contig 007489:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008E10Sequence604007489 (3)ref|XP_009797001.1|1e-56PREDICTED: ankyrin-3 [Nicotiana sylvestris]715002731 (2)ref|XP_008357856.1|3e-78PREDICTED: protein phosphatase 1 regulatory subunit 12C-like [Malus domestica]
JMFF050A03Sequence604007489 (3)ref|XP_009797001.1|1e-55PREDICTED: ankyrin-3 [Nicotiana sylvestris]592002731 (2)ref|XP_006338680.1|1e-58PREDICTED: ankyrin-3-like [Solanum tuberosum]
JMFS068C08Sequence605007489 (3)ref|XP_009797001.1|2e-64PREDICTED: ankyrin-3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS068C08+                            GATTAACATCTCCAAAATCTCAAGGTGGTTCTCCCTCACAGCT
JMFF008E10+                                                                   AGCT
JMFF050A03+                                                                   AGCT
                      ____________________________________________________________
consensus                              GATTAACATCTCCAAAATCTCAAGGTGGTTCTCCCTCACAGCT
 
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JMFS068C08+           ACTGTAGTAGCATATCCCCTGAAAAGTTTCTGGTTCACATCTGCTCCAATACTCAGCAGT
JMFF008E10+           ACTGTAGTAGCATATCCCCTGAAAAGTTTCTGGTTCACATCTGCTCCAATACTCAGCAGT
JMFF050A03+           ACTGTAGTAGCATATCCCCTGAAAAGTTTCTGGTTCACATCTGCTCCAATACTCAGCAGT
                      ____________________________________________________________
consensus             ACTGTAGTAGCATATCCCCTGAAAAGTTTCTGGTTCACATCTGCTCCAATACTCAGCAGT
 
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JMFS068C08+           TTCCTCACGAGTGCGACATTGCCGTTATGCACGGCCAGGAACAATGCGGTGACGTCGGTC
JMFF008E10+           TTCCTCACGAGTGCGACATTGCCGTTATGCACGGCCAGGAACAATGCGGTGACGTCGGTC
JMFF050A03+           TTCCTCACGAGTGCGACATNGCCGTTATGCACGGCCAGGAACAATGCGGTGACGTCGGTC
                      ____________________________________________________________
consensus             TTCCTCACGAGTGCGACATTGCCGTTATGCACGGCCAGGAACAATGCGGTGACGTCGGTC
 
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JMFS068C08+           TTAAACTCCTCGTAACCGACTCGAACTTCGTTGGGAGACTCCTCGCGCAGCACCACCTCC
JMFF008E10+           TTAAACTCCTCGTAACCGACTCGAACTTCGTTGGGAGACTCCTCGCGCAGCACCACCTCC
JMFF050A03+           TTAAACTCCTCGTAACCGACTCGAACTTCGTTGGGAGACTCCTCGCGCAGCACCACCTCC
                      ____________________________________________________________
consensus             TTAAACTCCTCGTAACCGACTCGAACTTCGTTGGGAGACTCCTCGCGCAGCACCACCTCC
 
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JMFS068C08+           GCCTTGCGCACCTTGAGACAAACATCGCCGACGAAGTTGACGTCGACGAAGGAATCCTGG
JMFF008E10+           GCCTTGCGCACCTTGAGACAAACATCGCCGACGAAGTTGACGTCGACGAAGGAATCCTGG
JMFF050A03+           GCCTTGCGCACCTTGAGACAAACATCGCCGACGAAGTTGACGTCGACGAAGGAATCCTGG
                      ____________________________________________________________
consensus             GCCTTGCGCACCTTGAGACAAACATCGCCGACGAAGTTGACGTCGACGAAGGAATCCTGG
 
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JMFS068C08+           AGGCACTCAAGCGCCGCTGCTAGATCGTTGGAATGCGAAGCTTCCAGAAGGCGTCGTGAC
JMFF008E10+           AGGCACTCAAGCGCCGCTGCTAGATCGTTGGAATGCGAAGCTTCCAGAAGGCGTCGTGAC
JMFF050A03+           AGGCACTCAAGCGCCGCTGCTAGATCGTTGGAATGCGAAGCTTCCAGAAGGCGTCGTGAC
                      ____________________________________________________________
consensus             AGGCACTCAAGCGCCGCTGCTAGATCGTTGGAATGCGAAGCTTCCAGAAGGCGTCGTGAC
 
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JMFS068C08+           ACCTCAGCTTCGTAGTTCACCGGAAAAACCTGCTTTCCGGCCAGGAAACCGCCGCCTCCA
JMFF008E10+           ACCTCAGCTTCGTAGTTCACCGGAAAAACCTGCTTTCCGGCCAGGAAACCGCCGCCTCCA
JMFF050A03+           ACCTCAGCTTCGTAGTTCACCGGAAAAACCTGCTTTCCGGCCAGGAAACCGCCGCCTCCA
                      ____________________________________________________________
consensus             ACCTCAGCTTCGTAGTTCACCGGAAAAACCTGCTTTCCGGCCAGGAAACCGCCGCCTCCA
 
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JMFS068C08+           CCTGAATGTCCAAAAACAGTCATTTCCTGCCAAGCAAAACACTGTCACTGCCTCTTCTGT
JMFF008E10+           CCTGAATGTCCAAAAACAGTCATTTCCTGCCAAGCAAAACACTGTCACTGCCTCTTCTGT
JMFF050A03+           CCTGAATGTCCAAAAACAGTCATTTCCTGCCAAGCAAAACACTGTCACTGCCTCTTCTGT
                      ____________________________________________________________
consensus             CCTGAATGTCCAAAAACAGTCATTTCCTGCCAAGCAAAACACTGTCACTGCCTCTTCTGT
 
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JMFS068C08+           TCCTCTGTCTAGATCTATCAGTGTCTATATATCTCTACAGAGAAGAAGCAGCAGAGGAAT
JMFF008E10+           TCCTCTGTCTAGATCTATCAGTGTCTATATATCTCTACAGAGAAGAAGCAGCAGAGGAAT
JMFF050A03+           TCCTCTGTCTAGATCTATCAGTGTCTATATATCTCTACAGAGAAGAAGCAGCAGAGGAAT
                      ____________________________________________________________
consensus             TCCTCTGTCTAGATCTATCAGTGTCTATATATCTCTACAGAGAAGAAGCAGCAGAGGAAT
 
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JMFS068C08+           CATCAGCAGAATTGTTTAATACTCTCTTTGTCGCTCTCTATCTCTCTCTGCGGGAGAATG
JMFF008E10+           CATCAGCAGAATTGTTTAATACTCTCTTTGTCGCTCTCTATCTCTCTCTGCGGGAGAATG
JMFF050A03+           CATCAGCAGAATTGTTTAATACTCTCTTTGTCGCTCTCTATCTCTCTCTGCGGGAGAATG
                      ____________________________________________________________
consensus             CATCAGCAGAATTGTTTAATACTCTCTTTGTCGCTCTCTATCTCTCTCTGCGGGAGAATG
 
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JMFS068C08+           GAGACGCGAGACTCGAGGTGGA                                      
JMFF008E10+           GAGACGCGAGACTCGAGGTGGAGTGGGTGAAGGAAGGAAACTTGAAAGAAGTGAG     
JMFF050A03+           GAGACGCGAGACTCGAGGTGGAGTGGGTGAAGGAAGGAAACTTGAAAGAAGTGAGCGCCC
                      ____________________________________________________________
consensus             GAGACGCGAGACTCGAGGTGGAGTGGGTGAAGGAAGGAAACTTGAAAGAAGTGAGCGCCC