| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019O24 | Sequence | 508 | 007488 (5) | ref|XP_009792116.1| | 1e-25 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP | 693 | 012294 (5) | |||
| JMFF025E11 | Sequence | 306 | 007488 (5) | ref|XP_009792116.1| | 3e-12 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP | 783 | 012294 (5) | emb|CDO98567.1| | 8e-62 | unnamed protein product [Coffea canephora] |
| JMFF025O18 | Sequence | 290 | 007488 (5) | ref|XP_009792116.1| | 3e-13 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP | 709 | 012294 (5) | emb|CDO98567.1| | 8e-78 | unnamed protein product [Coffea canephora] |
| JMFF047A21 | Sequence | 458 | 007488 (5) | ref|XP_006353939.1| | 9e-23 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Solanum tuberosum] | 398 | 012294 (5) | |||
| JMFF049H12 | Sequence | 618 | 007488 (5) | ref|XP_009792116.1| | 5e-37 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nicotiana sylvestris] ref|XP | 187 | 012294 (5) | |||
This contig is upended
. : . : . : . : . : . :
JMFF049H12+ ATCATTTTCCATAAGCTGT
____________________________________________________________
consensus ATCATTTTCCATAAGCTGT
. : . : . : . : . : . :
JMFF019O24+ TCCGAGATTCCCCGGAACCCCT
JMFF049H12+ TGGATCAACTGTTCGAGCCCAGGACCGACGAAGTAATCTCCGAGATTCCCCGGAACCCCT
____________________________________________________________
consensus TGGATCAACTGTTCGAGCCCAGGACCGACGAAGTAATCTCCGAGATTCCCCGGAACCCCT
. : . : . : . : . : . :
JMFF019O24+ CCACCACCGCCACTGTTTTCAAAAACCAATTGAATATTAGCACCGCTAGCCCTCATGGTC
JMFF047A21+ TCATGGTC
JMFF049H12+ CCACCACCGCCACTGTTTNCAAAAACCAATTGAATATTAGCACCGCTAGCCCTCATGGTC
____________________________________________________________
consensus CCACCACCGCCACTGTTTTCAAAAACCAATTGAATATTAGCACCGCTAGCCCTCATGGTC
. : . : . : . : . : . :
JMFF019O24+ TGCAAATAGTTCTGGAGGAAAAGAAGGGGATGGAATTGATTTGGGGATCGGCCGGCAGCC
JMFF047A21+ TGCAAATAGTTCTGGAGGAAAAGAAGGGGATGGAATTGATTTGGGGATCGGCCGGCAGCC
JMFF049H12+ TGCAAATAGTTCTGGAGGAAAAGAAGGGGATGGAATTGATTTGGGGATCGGCCGGCAGCC
____________________________________________________________
consensus TGCAAATAGTTCTGGAGGAAAAGAAGGGGATGGAATTGATTTGGGGATCGGCCGGCAGCC
. : . : . : . : . : . :
JMFF019O24+ ATACCACCGAACAAAGCAGAAAGATCATCAAGCGCAATCCCACCGCCGGAGGAGGCCGTG
JMFF047A21+ ATACCACCGAACAAAGCAGAAAGATCATCAAGCGCAATCCCACCGCCGGAGGAGGCCGTG
JMFF049H12+ ATACCACCGAACAAAGCAGAAAGATCATCAAGCGCAATCCCACCGCCGGAGGAGGCCGTG
____________________________________________________________
consensus ATACCACCGAACAAAGCAGAAAGATCATCAAGCGCAATCCCACCGCCGGAGGAGGCCGTG
. : . : . : . : . : . :
JMFF019O24+ GAGAACACAAGGCCCTCCCCTCCNTTCTCCTACTCCTCCTCCACCGCCGAAGCCAAAAGG
JMFF025E11+ CTCCTACTCCTCCTCCACCGCCGAAGCCAAAAGG
JMFF025O18+ CTACTCCTCCTCCACCGCCGAAGCCAAAAGG
JMFF047A21+ GAGAACACAAGGCCCTCCCCTCC-TCCTCCTACTCCTCCTCCACCGCCGAAGCCAAAAGG
JMFF049H12+ GAGAACACAAGGCCCTCCCCTCC-TCCTCCTACTCCTCCTCCACCGCCGAAGCCAAAAGG
____________________________________________________________
consensus GAGAACACAAGGCCCTCCCCTCC-TCCTCCTACTCCTCCTCCACCGCCGAAGCCAAAAGG
. : . : . : . : . : . :
JMFF019O24+ AAACGCATCGGCGCCGGGGAAGAAGGGATTATTGTTGCTAGGGTTTGTAGGCGGGGCGGT
JMFF025E11+ AAACGCATCGGCGCCGGGGAAGAAGGGATTATTGTTGCTAGGGTTTGTAGGCGGGGCGGT
JMFF025O18+ AAACGCATCGGCGCCGGGGAAGAAGGGATTATTGTTGCTAGGGTTTGTAGGCGGGGCGGT
JMFF047A21+ AAACGCATCGGCGCCGGGGAAGAAGGGATTATTGTTGCTAGGGTTTGTAGGCGGGGCGGT
JMFF049H12+ AAACGCATCGGCGCCGGGGAAGAAGGGATTATTGTTGCTAGGGTTTGTAGGCGGGGCGGT
____________________________________________________________
consensus AAACGCATCGGCGCCGGGGAAGAAGGGATTATTGTTGCTAGGGTTTGTAGGCGGGGCGGT
. : . : . : . : . : . :
JMFF019O24+ TTCGGCTTCTTCAAGAAAGTTGCCGTTGCAATTAGGGCAGACGAGTTCGGAGTTGGGCAA
JMFF025E11+ TTCGGCTTCTTCAAGAAAGTTGCCGTTGCAATTAGGGCAGACGAGTTCGGAGTTGGGCAA
JMFF025O18+ TTCGGCTTCTTCAAGAAAGTTGCCGTTGCAATTAGGGCAGACGAGTTCGGAGTTGGGCAA
JMFF047A21+ TTCGGCTTCTTCAAGAAAGTTGCCGTTGCAATTAGGGCAGACGAGTTCGGAGTTGGGCAA
JMFF049H12+ TTCGGCTTCTTCAAGAAAGTTGCCGTTGCAATTAGGGCAGACGAGTTCGGAGTTGGGCAA
____________________________________________________________
consensus TTCGGCTTCTTCAAGAAAGTTGCCGTTGCAATTAGGGCAGACGAGTTCGGAGTTGGGCAA
. : . : . : . : . : . :
JMFF019O24+ GGGGGTAATCGTCACCGTCCGCTCGCAATGGTAGCAGAAGTAATCCTGCGGCCCGCCGCC
JMFF025E11+ GGGGGTAATCGTCACCGTCCGCTCGCAATGGTAGCAGAAGTAATCCTGCGGCCCGCCGCC
JMFF025O18+ GGGGGTAATCGTCACCGTCCGCTCGCAATGGTAGCAGAAGTAATCCTGCGGCCCGCCGCC
JMFF047A21+ GGGGGTAATCGTCACCGTCCGCTCGCAATGGTAGCAGAAGTAATCCTGCGGCCCGCCGCC
JMFF049H12+ GGGGGTAATCGTCACCGTCCGCTCGCAATGGTAGCAGAAGTAATCCTGCGGCCCGCCGCC
____________________________________________________________
consensus GGGGGTAATCGTCACCGTCCGCTCGCAATGGTAGCAGAAGTAATCCTGCGGCCCGCCGCC
. : . : . : . : . : . :
JMFF019O24+ GCGACCGACTCCTTCTCCACCGCCACCAGAAATTCCGGCATGCGACATTTTCCGTGTTCG
JMFF025E11+ GCGACCGACTCCTTCTCCACCGCCACCAGAAATTCCGGCATGCGACATTTTCCGTGTTCG
JMFF025O18+ GCGACCGACTCCTTCTCCACCGCCACCAGAAATTCCGGCATGCGACATTTTCCGTGTTCG
JMFF047A21+ GCGACCGACTCCTTCTCCACCGCCACCAGAAATTCCGGCATGCGACATTTTCCGTGTTCG
JMFF049H12+ GCGACCGACTCCTTCTCCACCGCCACCAGAAATTCCGGCATGCGACATTTTCCGTGTTCG
____________________________________________________________
consensus GCGACCGACTCCTTCTCCACCGCCACCAGAAATTCCGGCATGCGACATTTTCCGTGTTCG
. : . : . : . : . : . :
JMFF019O24+ ATTGAC
JMFF025E11+ ATTGACAAGAAACGCCTCCAAGTT
JMFF025O18+ ATTGACAAGAAACGCCTCC
JMFF047A21+ ATTGACAAGAAACGCCTCCAAGTT
JMFF049H12+ ATTGACAAGAAACGCCTCCAAGTTGAAATGAATAGAAAAAGAGGAATAGTCGGACCCCGG
____________________________________________________________
consensus ATTGACAAGAAACGCCTCCAAGTTGAAATGAATAGAAAAAGAGGAATAGTCGGACCCCGG