Contig 007482:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038J11Sequence515007482 (3)gb|KDO63405.1|8e-62hypothetical protein CISIN_1g014750mg [Citrus sinensis]719002711 (4)ref|XP_007211435.1|1e-74hypothetical protein PRUPE_ppa007161mg [Prunus persica] gb|EMJ12634.1| hypotheti
JMFF047L15Sequence620007482 (3)dbj|BAJ33892.1|1e-74unnamed protein product [Thellungiella halophila]550002711 (4)ref|XP_007048725.1|2e-09SHAGGY-related protein kinase dZeta isoform 1 [Theobroma cacao] gb|EOX92882.1| S
JMSF010G14Sequence405007482 (3)gb|AGJ98225.1|1e-26BIN2-like protein PSK8 [Petunia x hybrida]729002711 (4)ref|XP_007211435.1|1e-74hypothetical protein PRUPE_ppa007161mg [Prunus persica] gb|EMJ12634.1| hypotheti

Alignment

This contig is upended


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JMFF047L15+                                                   CAGGAACATACTCCATGACT
                      ____________________________________________________________
consensus                                                     CAGGAACATACTCCATGACT
 
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JMFF038J11+                                      GTTGTAGAAAAGAAGCAGTGTTTTAAAGAAATG
JMFF047L15+           AGATTAAGGAAAAGCTCATCTCGAGCAGTTGTAGAAAAGAAGCAGTGTTTTAAAGAAATG
                      ____________________________________________________________
consensus             AGATTAAGGAAAAGCTCATCTCGAGCAGTTGTAGAAAAGAAGCAGTGTTTTAAAGAAATG
 
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JMFF038J11+           ACATTTGGGTGATCCATCAAGCGCATCAGCNGTAGCTCACGATTTTTATACCGTCTGTCC
JMFF047L15+           ACATTTGGGTGATCCATCAAGCGCATCAGCTGTAGCTCACGATTTTTATACCGTCTGTCC
                      ____________________________________________________________
consensus             ACATTTGGGTGATCCATCAAGCGCATCAGCTGTAGCTCACGATTTTTATACCGTCTGTCC
 
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JMFF038J11+           TGCAAAACCTTCTTTATGGCCACAGTTTCCCCAGTTTTTAAGCATTTTGCCTGGAAAACT
JMSF010G14+                                                                   AACT
JMFF047L15+           TGCAAAACCTTCTTTATGGCCACAGTTTCCCCAGTTTCTAAGCATTTTGCCTGGAAAACT
                      ____________________________________________________________
consensus             TGCAAAACCTTCTTTATGGCCACAGTTTCCCCAGTTTTTAAGCATTTTGCCTGGAAAACT
 
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JMFF038J11+           ATTCCGAATGATCCCGTTCCAACAACACGTTCTGCCATGTAAGTAATTGTCCTTTTGGGT
JMSF010G14+           ATTCCGAATGATCCCGTTCCAACAACACGTTCTGCCATGTAAGTAATTGTCCTTTTGGGT
JMFF047L15+           ATTCCGAATGATCCCGTTCCAACAACACGTTCTGCCATGTAAGTAATTGTCCTTTTGGGT
                      ____________________________________________________________
consensus             ATTCCGAATGATCCCGTTCCAACAACACGTTCTGCCATGTAAGTAATTGTCCTTTTGGGT
 
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JMFF038J11+           TCTCCATTCTTGCCTCCAATTGTGGTTGAAATAATGTGACCAGTGACAGCTTCATTCCCT
JMSF010G14+           TCTCCATTCTTGCCTCCAATTGTGGTTGAAATAATGTGACCAGTGACAGCTTCATTCCCT
JMFF047L15+           TCTCCATTCTTGCCTCCAATTGTGGTTGAAATAATGTGACCAGTGACAGCTTCATTCCCT
                      ____________________________________________________________
consensus             TCTCCATTCTTGCCTCCAATTGTGGTTGAAATAATGTGACCAGTGACAGCTTCATTCCCT
 
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JMFF038J11+           TCAACTACAGCAGCTGACATTTCCTTGTCGGTCTCCATCTCCGGCCGTTGAGCAGTGGCG
JMSF010G14+           TCAACTACAGCAGCTGACATTTCCTTGTCGGTCTCCATCTCCGGCCGTTGAGCAGTGGCG
JMFF047L15+           TCAACTACAGCAGCTGACATTTCCTTGTCGGTCTCCATCTCCGGCCGTTGAGCAGTGGCG
                      ____________________________________________________________
consensus             TCAACTACAGCAGCTGACATTTCCTTGTCGGTCTCCATCTCCGGCCGTTGAGCAGTGGCG
 
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JMFF038J11+           GCCGCGACGTGCCTCACGGCTGCTGCTCCGCCTTGGTCATGGTGTTGTTGCTGTAAATGT
JMSF010G14+           GCCGCGACGTGCCTCACGGCTGCTGCTCCGCCTTGGTCATGGTGTTGTTGCTGTAAATGT
JMFF047L15+           GCCGCGACGTGCCTCACGGCTGCTGCTCCGCCTTGGTCATGGTGTTGTTGCTGTAAATGT
                      ____________________________________________________________
consensus             GCCGCGACGTGCCTCACGGCTGCTGCTCCGCCTTGGTCATGGTGTTGTTGCTGTAAATGT
 
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JMFF038J11+           TGATTGTTCGATGGATTATTGTGCTGAGGCCCCAGCGGCAACGAGGCCATGTGATGCTGC
JMSF010G14+           TGATTGTTCGATGGATTATTGTGCTGAGGCCCCAGCGGCAACGAGGCCATGTGATGCTGC
JMFF047L15+           TGATTGTTCGATGGATTATTGTGCTGAGGCCCCAGCGGCAACGAGGCCATGTGATGCTGC
                      ____________________________________________________________
consensus             TGATTGTTCGATGGATTATTGTGCTGAGGCCCCAGCGGCAACGAGGCCATGTGATGCTGC
 
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JMFF038J11+           TCTCTCTCTCTCTCTCTATAGTTCCTTCTTCCTCCTCCCTCCCTCCCTCCCTCTCTCTCT
JMSF010G14+           TCTCTCTCTCTCTCTCTATAGTTCCTTCTTCCTCCTCCCTCCCTCCCTCCCTCTCTCTCT
JMFF047L15+           TCTCTCTCTCTCTCTCTATAGTTCCTTCTTCCTCCTCCCTCCCTCCCTCCCTCTCTCTCT
                      ____________________________________________________________
consensus             TCTCTCTCTCTCTCTCTATAGTTCCTTCTTCCTCCTCCCTCCCTCCCTCCCTCTCTCTCT
 
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JMFF038J11+           CT                                                          
JMSF010G14+           CTAGTTTTCTTTTTCTCTCTCTACAATTATGTTATCTACT                    
JMFF047L15+           CTAGTTTTCTTTTTCTCTCTCTACAATTATGTTATCTACTAGTGTGGTTTGGATTTCCGG
                      ____________________________________________________________
consensus             CTAGTTTTCTTTTTCTCTCTCTACAATTATGTTATCTACTAGTGTGGTTTGGATTTCCGG