Contig 007477:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046M10Sequence587007477 (3)emb|CDP10939.1|2e-82unnamed protein product [Coffea canephora]595011191 (2)ref|XP_004242038.1|2e-36PREDICTED: replication factor C subunit 3 [Solanum lycopersicum]
JMSF028F03Sequence639007477 (3)gb|KJB59291.1|2e-95hypothetical protein B456_009G247600 [Gossypium raimondii]746011191 (2)ref|XP_009629771.1|1e-143PREDICTED: replication factor C subunit 3 [Nicotiana tomentosiformis]
JMSF049K16Sequence712007477 (3)emb|CDP10939.1|9e-66unnamed protein product [Coffea canephora]816024694ref|XP_009629771.1|8e-53PREDICTED: replication factor C subunit 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF049K16+ CTCATCCAACAGCACTAACTTCACAGCAAACTTCGCACTGCCAAAAAGACAATAG
                      ____________________________________________________________
consensus CTCATCCAACAGCACTAACTTCACAGCAAACTTCGCACTGCCAAAAAGACAATAG
 
. : . : . : . : . : . :
JMSF049K16+ TTTTGGAGGACTTTGAAGTAAAGGAAAAACTTTTTGGGGCTAAGAAAAGCATAATGAGAA
                      ____________________________________________________________
consensus TTTTGGAGGACTTTGAAGTAAAGGAAAAACTTTTTGGGGCTAAGAAAAGCATAATGAGAA
 
. : . : . : . : . : . :
JMSF049K16+ AATAGATATAAATGAGTCTGTATGCATCCTTCCACTCATTGTCACCCCTTCAGTTCTCAA
                      ____________________________________________________________
consensus AATAGATATAAATGAGTCTGTATGCATCCTTCCACTCATTGTCACCCCTTCAGTTCTCAA
 
. : . : . : . : . : . :
JMSF028F03+ CCAAAGGAGATGCTTTGAGTACTAGCAAAGTCCT
JMSF049K16+ ATACAATCTCTATAGGAGAGAATTACCCAAAGGAGATGCTTTGAGTACTAGCAAAGTCCT
JMFF046M10+ CCAAAGGAGATGCTNTGAGTACTAGCAAAGTCCT
                      ____________________________________________________________
consensus ATACAATCTCTATAGGAGAGAATTACCCAAAGGAGATGCTTTGAGTACTAGCAAAGTCCT
 
. : . : . : . : . : . :
JMSF028F03+ GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
JMSF049K16+ GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
JMFF046M10+ GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
                      ____________________________________________________________
consensus GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
 
. : . : . : . : . : . :
JMSF028F03+ TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
JMSF049K16+ TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
JMFF046M10+ TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
                      ____________________________________________________________
consensus TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
 
. : . : . : . : . : . :
JMSF028F03+ CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACTCGCAAGCCTGT
JMSF049K16+ CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACCCGCAAGCCTGT
JMFF046M10+ CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACTCGCAAGCCTGT
                      ____________________________________________________________
consensus CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACTCGCAAGCCTGT
 
. : . : . : . : . : . :
JMSF028F03+ CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
JMSF049K16+ CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
JMFF046M10+ CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
                      ____________________________________________________________
consensus CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
 
. : . : . : . : . : . :
JMSF028F03+ TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
JMSF049K16+ TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
JMFF046M10+ TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
                      ____________________________________________________________
consensus TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
 
. : . : . : . : . : . :
JMSF028F03+ TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
JMSF049K16+ TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
JMFF046M10+ TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
                      ____________________________________________________________
consensus TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
 
. : . : . : . : . : . :
JMSF028F03+ CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
JMSF049K16+ CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
JMFF046M10+ CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
                      ____________________________________________________________
consensus CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
 
. : . : . : . : . : . :
JMSF028F03+ GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTAC
JMSF049K16+ GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTAC
JMFF046M10+ GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTACAATT
                      ____________________________________________________________
consensus GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTACAATT