Contig 007477:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046M10Sequence587007477 (3)emb|CDP10939.1|2e-82unnamed protein product [Coffea canephora]595011191 (2)ref|XP_004242038.1|2e-36PREDICTED: replication factor C subunit 3 [Solanum lycopersicum]
JMSF028F03Sequence639007477 (3)gb|KJB59291.1|2e-95hypothetical protein B456_009G247600 [Gossypium raimondii]746011191 (2)ref|XP_009629771.1|1e-143PREDICTED: replication factor C subunit 3 [Nicotiana tomentosiformis]
JMSF049K16Sequence712007477 (3)emb|CDP10939.1|9e-66unnamed protein product [Coffea canephora]816024694ref|XP_009629771.1|8e-53PREDICTED: replication factor C subunit 3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049K16+                CTCATCCAACAGCACTAACTTCACAGCAAACTTCGCACTGCCAAAAAGACAATAG
                      ____________________________________________________________
consensus                  CTCATCCAACAGCACTAACTTCACAGCAAACTTCGCACTGCCAAAAAGACAATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049K16+           TTTTGGAGGACTTTGAAGTAAAGGAAAAACTTTTTGGGGCTAAGAAAAGCATAATGAGAA
                      ____________________________________________________________
consensus             TTTTGGAGGACTTTGAAGTAAAGGAAAAACTTTTTGGGGCTAAGAAAAGCATAATGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049K16+           AATAGATATAAATGAGTCTGTATGCATCCTTCCACTCATTGTCACCCCTTCAGTTCTCAA
                      ____________________________________________________________
consensus             AATAGATATAAATGAGTCTGTATGCATCCTTCCACTCATTGTCACCCCTTCAGTTCTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+                                     CCAAAGGAGATGCTTTGAGTACTAGCAAAGTCCT
JMSF049K16+           ATACAATCTCTATAGGAGAGAATTACCCAAAGGAGATGCTTTGAGTACTAGCAAAGTCCT
JMFF046M10+                                     CCAAAGGAGATGCTNTGAGTACTAGCAAAGTCCT
                      ____________________________________________________________
consensus             ATACAATCTCTATAGGAGAGAATTACCCAAAGGAGATGCTTTGAGTACTAGCAAAGTCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
JMSF049K16+           GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
JMFF046M10+           GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
                      ____________________________________________________________
consensus             GAATCTGCTGCCTTACAACATCAATCCCACGATCATCAGAAGCATTCAACTCTAAAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
JMSF049K16+           TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
JMFF046M10+           TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
                      ____________________________________________________________
consensus             TATTTTGCATCTGCGCTCCGTAAAGCTTCCGAGCCATGGCAAGAATTGTGGAGGTCTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACTCGCAAGCCTGT
JMSF049K16+           CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACCCGCAAGCCTGT
JMFF046M10+           CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACTCGCAAGCCTGT
                      ____________________________________________________________
consensus             CAGTTCCGGGAGGCCCATACAGCAGCAGATGCGGTAGCCTGTTGCTACTCGCAAGCCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
JMSF049K16+           CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
JMFF046M10+           CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
                      ____________________________________________________________
consensus             CAATGGTTTCGACAATGTCCTTATGGGCAGCGACGTCGGAGAGGGACTGAGGACGATACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
JMSF049K16+           TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
JMFF046M10+           TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
                      ____________________________________________________________
consensus             TTTCAACCCAAGGCGTGGCTTTGGTGGCGATGTTTTTCCCCTTGTTGAGCTTTGAACTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
JMSF049K16+           TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
JMFF046M10+           TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
                      ____________________________________________________________
consensus             TGTTGCCCTCGTTTTGGTCATCGTCAATGTCCATAACTGAGATCACCTCCGCCATTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
JMSF049K16+           CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
JMFF046M10+           CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
                      ____________________________________________________________
consensus             CTGCTATATGTATATAGTGTTCCGAGTAGCAATTAGTATAAAATAGGTACGAACTGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF028F03+           GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTAC    
JMSF049K16+           GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTAC    
JMFF046M10+           GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTACAATT
                      ____________________________________________________________
consensus             GGAATGCAGGATGCCTTTCTACAGCATGAATGATGAACCCTAGCTAGGGATTTTACAATT