| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031L12 | Sequence | 544 | 007472 (5) | ref|XP_009794644.1| | 264 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 369 | 004122 (4) | ref|XP_011043650.1| | 122 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Populus euphratica] |
| JMFF041P24 | Sequence | 649 | 007472 (5) | ref|XP_009794644.1| | 314 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 599 | 004122 (4) | emb|CDP10626.1| | 8e-74 | unnamed protein product [Coffea canephora] |
| JMFF045F02 | Sequence | 611 | 007472 (5) | ref|XP_009794644.1| | 290 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 646 | 004122 (4) | ref|XP_011043650.1| | 236 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Populus euphratica] |
| JMFN014B05 | Sequence | 636 | 007472 (5) | ref|XP_009794644.1| | 214 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | |||||
| JMSF026N21 | Sequence | 642 | 007472 (5) | ref|XP_009794644.1| | 311 | PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Nicotiana sylvestris] | 724 | 004122 (4) | emb|CDP10626.1| | 7e-109 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF026N21+ TACCAACAGGCATACCTGGCCAAACATGCATCCCAAACATGGATTG
JMFN014B05+ TACCAACAGGCATACCTGGCCAAACATGCATCCCAAACATGGATTG
JMFF041P24+ AATTGTACCAACAGGCATACCTGGCCAAACATGCATCCCAAACATGGATTG
JMFF045F02+ AAACATGGATTG
____________________________________________________________
consensus AATTGTACCAACAGGCATACCTGGCCAAACATGCATCCCAAACATGGATTG
. : . : . : . : . : . :
JMSF026N21+ AAAATCATCAAGGGCTCCTTCCTTTATCATATGGTACGCGCCACCCATGCCTTCTTCAGC
JMFN014B05+ AAAATCATCAAGGGCTCCTTCCTTTATCATATGGTACGCGCCACCCATGCCTTCTTCAGC
JMFF041P24+ AAAATCATCAAGGGCTCCTTCCTTTATCATATGGTACGCGCCACCCATGCCTTCTTCAGC
JMFF031L12+ TTCAGC
JMFF045F02+ AAAATCATCAAGGGCTCCTTCCTTTATCATATGGTACGCGCCACCCATGCCTTCTTCAGC
____________________________________________________________
consensus AAAATCATCAAGGGCTCCTTCCTTTATCATATGGTACGCGCCACCCATGCCTTCTTCAGC
. : . : . : . : . : . :
JMSF026N21+ AGGTTGGAAGACAAGCTTAACAGTGCCCTTCAAGCTCTCCTTCCTGTTCTGAAGCAATCT
JMFN014B05+ AGGTTGGAAGACAAGCTTAACAGTGCCCTTCAAGCTCTCCTTCCTGTTCTGAAGCAATCT
JMFF041P24+ AGGTTGGAAGACAAGCTTAACAGTGCCCTTCAAGCTCTCCTTCCTGTTCTGAAGCAATCT
JMFF031L12+ AGGTTGGAAGACAAGCTTAACAGTGCCCTTCAAGCTCTCCTTCCTGTTCTGAAGCAATCT
JMFF045F02+ AGGTTGGAAGACAAGCTTAACAGTGCCCTTCAAGCTCTCCTTCCTGTTCTGAAGCAATCT
____________________________________________________________
consensus AGGTTGGAAGACAAGCTTAACAGTGCCCTTCAAGCTCTCCTTCCTGTTCTGAAGCAATCT
. : . : . : . : . : . :
JMSF026N21+ AGCTGCTCCAAGCAGCATGGTGACATGAGCATCATGACCACAAGCATGCATTTTGCCATT
JMFN014B05+ AGCTGCTCCAAGCAGCATGGTGACATGAGCATCATGACCACAAGCATGCATTTTGCCATT
JMFF041P24+ AGCTGCTCCAAGCAGCATGGTGACATGAGCATCATGACCACAAGCATGCATTTTGCCATT
JMFF031L12+ AGCTGCTCCAAGCAGCATGGTGACATGAGCATCATGACCACAAGCATGCATTTTGCCATT
JMFF045F02+ AGCTGCTCCAAGCAGCATGGTGACATGAGCATCATGACCACAAGCATGCATTTTGCCATT
____________________________________________________________
consensus AGCTGCTCCAAGCAGCATGGTGACATGAGCATCATGACCACAAGCATGCATTTTGCCATT
. : . : . : . : . : . :
JMSF026N21+ AATCTTGCTCTTGTGCTCCCACTCAACCAATTCCTGAATTGGGAGAGCATCCATATCAGC
JMFN014B05+ AATCTTGCTCTTGTGCTCCCACTCAACCAATTCCTGAATTGGGAGAGCATCCATATCAGC
JMFF041P24+ AATCTTGCTCTTGTGCTCCCACTCAACCAATTCCTGAATTGGGAGAGCATCCATATCAGC
JMFF031L12+ AATCTTGCTCTTGTGCTCCCACTCAACCAATTCCTGAATTGGGAGAGCATCCATATCAGC
JMFF045F02+ AATCTTGCTCTTGTGCTCCCACTCAACCAATTCCTGAATTGGGAGAGCATCCATATCAGC
____________________________________________________________
consensus AATCTTGCTCTTGTGCTCCCACTCAACCAATTCCTGAATTGGGAGAGCATCCATATCAGC
. : . : . : . : . : . :
JMSF026N21+ TCTCAAGCCAAACCAAGGTTGATTCCCGGAGCCAATAGCAGCCACCACCCCAGTCTTGGC
JMFN014B05+ TCTCAAGCCAAACCAAGGTTGATTCCCGGAGCCAATAGCAGCCACCACCCCAGTCTTGGC
JMFF041P24+ TCTCAGGCCAAACCAAGGTTGATTCCCGGAGCCAATAGCAGCCACCACCCCAGTCTTGGC
JMFF031L12+ TCTCAAGCCAAACCAAGGTTGATTCCCGGAGCCAATAGCAGCCACCACCCCAGTCTTGGC
JMFF045F02+ TCTCAAGCCAAACCAAGGTTGATTCCCGGAGCCAATAGCAGCCACCACCCCAGTCTTGGC
____________________________________________________________
consensus TCTCAAGCCAAACCAAGGTTGATTCCCGGAGCCAATAGCAGCCACCACCCCAGTCTTGGC
. : . : . : . : . : . :
JMSF026N21+ AACCGGCCAGG-AATACCCGATTCCCAGCGAGTCAAGCTCGTTTCTGATGAGTTGACTCG
JMFN014B05+ AACCGGCCAGGAAATACCCGATTCCCAGCGAGTCAAGCTCGTTTCTGATGAGTTGACTCG
JMFF041P24+ AACCGGCCAGG-AATACCCGATTCCCAGCGAGTCAAGCTCGTTTCTGATGAGTTGACTCG
JMFF031L12+ AACCGGCCAGG-AATACCCGATTCCCAGCGAGTCAAGCTCGTTTCTGATGAGTTGACTCG
JMFF045F02+ AACCGGCCAGG-AATACCCGATTCCCAGCGAGTCAAGCTCGTTTCTGATGAGTTGACTCG
____________________________________________________________
consensus AACCGGCCAGG-AATACCCGATTCCCAGCGAGTCAAGCTCGTTTCTGATGAGTTGACTCG
. : . : . : . : . : . :
JMSF026N21+ TGCGGTGCTCTTCGAACCCCAGCTCCGGGTACTCATGGAGAGTCCTCCGGACCCGTTTCA
JMFN014B05+ TGCGGTGCTCTTCGAACCCCAGCTCCGGGTACTCATGGAGAGTCCTCCGGACCCGTTTCA
JMFF041P24+ TGCGGTGCTCTTCGAACCCCAGCTCCGGGTACTCATGGAGAGTCCTCCGGACCCGTTTCA
JMFF031L12+ TGCGGTGCTCTTCGAACCCCAGCTCCGGGTACTCATGGAGAGTCCTCCGGACCCGTTTCA
JMFF045F02+ TGCGGTGCTCTTCGAACCCCAGCTCCGGGTACTCATGGAGAGTCCTCCGGACCCGTTTCA
____________________________________________________________
consensus TGCGGTGCTCTTCGAACCCCAGCTCCGGGTACTCATGGAGAGTCCTCCGGACCCGTTTCA
. : . : . : . : . : . :
JMSF026N21+ GCCAATCGAAGAACTCGGGATCCCTGGCCGAGTCCAAGAGATCCCGAGTCAGCTGCGACA
JMFN014B05+ GCCAATCGAAGAACTCGGGATCCCTGGCCGAGTCCAAGAGATCCCGAGTCAGCTGCGACA
JMFF041P24+ GCCAATCGAAGAACTCGGGATCCCTGGCCGAGTCCAAGAGATCCCGAGTCAGCTGCGACA
JMFF031L12+ GCCAATCGAAGAACTCGGGATCCCTGGCCGAGTCCAAGAGATCCCGAGTCAGCTGCGACA
JMFF045F02+ GCCAATCGAAGAACTCGGGATCCCTGGCCGAGTCCAAGAGATCCCGAGTCAGCTGCGACA
____________________________________________________________
consensus GCCAATCGAAGAACTCGGGATCCCTGGCCGAGTCCAAGAGATCCCGAGTCAGCTGCGACA
. : . : . : . : . : . :
JMSF026N21+ CAGTCTCCGATCCCAAACGAGTTTGCAGAGAGCAGCAATGCCACGGACTGGATATCGCCA
JMFN014B05+ CAGTCTCCGATCCCAAACGAGTTTGCAGAGAGCAGCAATGCCACGGACTGGATATCGCCA
JMFF041P24+ CAGTCTCCGATCCCAAACGAGTTTGCAGAGAGCAGCAATGCCACGGACTGGATATCGCCA
JMFF031L12+ CAGTCTCCGATCCCAAACGAGTTTGCAGAGAGCAGCAATGCCACGGACTGGATATCGCCA
JMFF045F02+ CAGTCTCCGATCCCAAACGAGTTTGCAGAGAGCAGCAATGCCACGGACTGGATATCGCCA
____________________________________________________________
consensus CAGTCTCCGATCCCAAACGAGTTTGCAGAGAGCAGCAATGCCACGGACTGGATATCGCCA
. : . : . : . : . : . :
JMSF026N21+ CGATTAGGGCGAACCATACGCACCTGAAACTGGCGGAAGCTTTCATGGCAGCTC
JMFN014B05+ CGATTAGGGCGATCCATACGCACCTGAAACTGGCGGAAGCTTTCAT
JMFF041P24+ CGATTAGGGCGAACCATACGCACCTGAAACTGGCGGAAGCTTTCATGGCAGCTC
JMFF031L12+ CGATTAGGGCGAACCATACGCACCTGAAACTGGCGGAAGCTTTCATGGCAGCTCGC
JMFF045F02+ CGATTAGGGCGAACCATACGCACCTGAAACTGGCGGAAGCTTTCATGGCAGCTCGCAACC
____________________________________________________________
consensus CGATTAGGGCGAACCATACGCACCTGAAACTGGCGGAAGCTTTCATGGCAGCTCGCAACC