| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010P20 | Sequence | 593 | 007468 (8) | ref|XP_006298710.1| | 4e-95 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 | 575 | 007468 (8) | ref|XP_006298710.1| | 3e-95 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 |
| JMFF016O14 | Sequence | 594 | 007468 (8) | ref|XP_006298710.1| | 4e-95 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 | |||||
| JMFF029M07 | Sequence | 417 | 007468 (8) | ref|XP_006298710.1| | 2e-88 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 | 586 | 007468 (8) | ref|XP_006298710.1| | 3e-95 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 |
| JMFF044D16 | Sequence | 605 | 007468 (8) | ref|XP_006298710.1| | 4e-95 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 | |||||
| JMFF049I23 | Sequence | 246 | 007468 (8) | ref|XP_006298710.1| | 3e-43 | hypothetical protein CARUB_v10014805mg, partial [Capsella rubella] gb|EOA31608.1 | 220 | 007468 (8) | gb|AFW74002.1| | 3e-06 | hypothetical protein ZEAMMB73_103592 [Zea mays] |
This contig is upended
. : . : . : . : . : . :
JMFF016O14+ TTTAAAAATAACTGTCATTAATATAACTCAAATTNTCAGTGATACAAAATGCTTATG
rJMFF029M07- TAACTGTCATTAATATAACTCAAATTCTCAGTGATACAAAATGCTTATG
rJMFF049I23- TAAAAATAACTGTCATTAATATAACTCAAATTCTCAGTGATACAAAATGCTTATG
JMFF010P20+ TAAAAATAACTGTCATTAATATAACTCAAATTNTCAGTGATACAAAATGCTTATG
rJMFF010P20- AATATAACTCAAATTCTCAGTGATACAAAATGCTTATG
____________________________________________________________
consensus TTTAAAAATAACTGTCATTAATATAACTCAAATTCTCAGTGATACAAAATGCTTATG
. : . : . : . : . : . :
JMFF016O14+ GCCAAGAACTCAATGTCAAAAACTCAAAAAACCAACCAAAACAAAAATCCAACTAATACA
rJMFF029M07- GCCAAGAACTCAATGTCAAAAACTCAAAAAACCAACCAAAACAAAAATCCAACTAATACA
rJMFF049I23- GCCAAGAACTCAATGTCAAAAACTCAAAAAACCAACCAAACCAAAAATCCAACTAATACA
JMFF010P20+ GCCAAGAACTCAATGTCAAAAACTCAAAAAACCAACCAAAACAAAAATCCAACTAATACA
rJMFF010P20- GCCAAGAACTCAATGTCAAAAACTCAAAAAACCAACCAAAACAAAAATCCAACTAATACA
____________________________________________________________
consensus GCCAAGAACTCAATGTCAAAAACTCAAAAAACCAACCAAAACAAAAATCCAACTAATACA
. : . : . : . : . : . :
JMFF016O14+ TAATATCCGTCATATCACATTATCACTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF029M07- TAATATCCGTCATATCACATTATCACTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF049I23- TAATATCCGTCATATCCCATTATCACTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFF010P20+ TAATATCCGTCATATCACATTATCACTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
rJMFF010P20- TAATATCCGTCATATCACATTATCACTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
JMFF044D16+ CTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
____________________________________________________________
consensus TAATATCCGTCATATCACATTATCACTAAACAATAGCATTGGCAGCACTGGCAATCCTAG
. : . : . : . : . : . :
JMFF016O14+ GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
rJMFF029M07- GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
rJMFF049I23- GCCAAAAATCTGCACAATCCTTGCCAATAGGCCCAGTAATTGCA
JMFF010P20+ GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
JMFF029M07+ GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
rJMFF010P20- GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
JMFF044D16+ GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
____________________________________________________________
consensus GCCAAAGATCTGCACACTCCTTGCCAATAGGCCCAGTAATTGCAGACCCTTTCATTTCTC
. : . : . : . : . : . :
JMFF016O14+ CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
rJMFF029M07- CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
JMFF010P20+ CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
JMFF029M07+ CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
rJMFF010P20- CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
JMFF044D16+ CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
____________________________________________________________
consensus CTTTGGGATTCACAATCACCCCAGCATTGTCTTCAAAATACATGAAAACACCGTCCTTTC
. : . : . : . : . : . :
JMFF016O14+ GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
rJMFF029M07- GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
JMFF010P20+ GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
JMFF029M07+ GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
JMFF049I23+ TGAGATCGG
rJMFF010P20- GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
JMFF044D16+ GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
____________________________________________________________
consensus GGCGCCAAGGCTTGCGCTGACGGACGATCACGGCCGGCATGACCTTCTTCCTGAGATCGG
. : . : . : . : . : . :
JMFF016O14+ GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
rJMFF029M07- GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
JMFF010P20+ GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
JMFF029M07+ GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
JMFF049I23+ GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
rJMFF010P20- GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
JMFF044D16+ GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
____________________________________________________________
consensus GCTTACCCTTCTTCACGGTGGCCATCACCATGTCCCCGACGCAAGCAGAGGGCAACCTGT
. : . : . : . : . : . :
JMFF016O14+ TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
rJMFF029M07- TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
JMFF010P20+ TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
JMFF029M07+ TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
JMFF049I23+ TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
rJMFF010P20- TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
JMFF044D16+ TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
____________________________________________________________
consensus TGAGTCTACCCTTGATTCCCTTCACCGATATAATGTAGAGATTCTTAGCACCGGTGTTGT
. : . : . : . : . : . :
JMFF016O14+ CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
rJMFF029M07- CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
JMFF010P20+ CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
JMFF029M07+ CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
JMFF049I23+ CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
rJMFF010P20- CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
JMFF044D16+ CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
____________________________________________________________
consensus CGGCGCAGTTCACCGTCGCAGCCACCGGCAGACCCAGCGACATGCGGAATTTGTTCCCCG
. : . : . : . : . : . :
JMFF016O14+ CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACT
rJMFF029M07- CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACT
JMFF010P20+ CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACT
JMFF029M07+ CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACT
JMFF049I23+ CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACT
rJMFF010P20- CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACT
JMFF044D16+ CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACTAGT
____________________________________________________________
consensus CGGAACCTCCGCGTCCTCGCTTCGACATTGTTGATGCTTTCTCTCTCTTCTGAAACTAGT