Contig 007464:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042O17Sequence596007464 (2)
JMSF039P11Sequence682007464 (2)gb|KDO82761.1|3e-52hypothetical protein CISIN_1g010432mg [Citrus sinensis]883007195 (12)ref|XP_011034212.1|3e-141PREDICTED: probable receptor-like protein kinase At5g15080 [Populus euphratica]

Alignment

This contig is upended


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JMSF039P11+                                                 GTTCACCGAGATAATTTACTTC
                      ____________________________________________________________
consensus                                                   GTTCACCGAGATAATTTACTTC
 
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JMSF039P11+           AGCAAGCCACTCCTTATGACCCTGAAGTCCATTTTGATTGAGAGTCTTCACTGCAGCAGG
                      ____________________________________________________________
consensus             AGCAAGCCACTCCTTATGACCCTGAAGTCCATTTTGATTGAGAGTCTTCACTGCAGCAGG
 
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JMSF039P11+           GAGTCCCGATCCAGGCCTTACTGGCGTAAATCCATTTGCATTGATCCAACCTTTGTAAAC
                      ____________________________________________________________
consensus             GAGTCCCGATCCAGGCCTTACTGGCGTAAATCCATTTGCATTGATCCAACCTTTGTAAAC
 
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JMSF039P11+           AGACCCAAAGCCTCCCTCGCCAAGAAGACATTCGGGTCTGAAGTTCCTCGTTGCTGCTTT
                      ____________________________________________________________
consensus             AGACCCAAAGCCTCCCTCGCCAAGAAGACATTCGGGTCTGAAGTTCCTCGTTGCTGCTTT
 
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JMSF039P11+           TAGTTCATTATAAGTGAATTTCCGAAGCTGAGAGGCGATTTTCAGTTCCTCACCTTTGTT
                      ____________________________________________________________
consensus             TAGTTCATTATAAGTGAATTTCCGAAGCTGAGAGGCGATTTTCAGTTCCTCACCTTTGTT
 
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JMSF039P11+           AGGAGCAACTGGAGATGATAAAACTAAAGCAACTGGAGGGTCTGTATTGGTATCACTAAA
                      ____________________________________________________________
consensus             AGGAGCAACTGGAGATGATAAAACTAAAGCAACTGGAGGGTCTGTATTGGTATCACTAAA
 
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JMSF039P11+           ACCTTTGGTATCATGGTGTGTAACAGAGCTATCTACTCTAGACCTTGATGGCATGCAGTT
                      ____________________________________________________________
consensus             ACCTTTGGTATCATGGTGTGTAACAGAGCTATCTACTCTAGACCTTGATGGCATGCAGTT
 
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JMSF039P11+           CCCCAGAAAACACAAGTTAAACCAACAGCAACTCTGCTCAGCACCGCCATCATCATCATT
                      ____________________________________________________________
consensus             CCCCAGAAAACACAAGTTAAACCAACAGCAACTCTGCTCAGCACCGCCATCATCATCATT
 
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JMSF039P11+           ATCATTATTCTTCCCCATTCCAGACTTTGATTTGCCCATTCCTGAAGACTTGGCATTGCC
JMFF042O17+               TTATTCTTCCCCATTCCAGACTTTGATTTGCCCATTCCTGAAGACTTGGCATTGCC
                      ____________________________________________________________
consensus             ATCATTATTCTTCCCCATTCCAGACTTTGATTTGCCCATTCCTGAAGACTTGGCATTGCC
 
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JMSF039P11+           AGCTTCTTCAGGACCTGAACCCATTTTTCTTCCTTTCAAATCTCAAAAACTGAATTCTTC
JMFF042O17+           AGCTTCTTCAGGACCTGAACCCATTTTTCTTCCTTTCAAATCTCAAAAACTGAATTCTTC
                      ____________________________________________________________
consensus             AGCTTCTTCAGGACCTGAACCCATTTTTCTTCCTTTCAAATCTCAAAAACTGAATTCTTC
 
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JMSF039P11+           TATATCTATAGCCAAATCAAGAATTTAAGGGGTAACCCGTAACCCCAGCCAACAAGATAA
JMFF042O17+           TATATCTATAGCCAAATCAAGAATTTAAGGGGTAACCCGTAACCCCAGCCAACAAGATAA
                      ____________________________________________________________
consensus             TATATCTATAGCCAAATCAAGAATTTAAGGGGTAACCCGTAACCCCAGCCAACAAGATAA
 
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JMSF039P11+           CTAAGAATACAAACTTGTAATCACAAGGTCACAAGTTCAAATCTCAGTCTTCTTGATTT 
JMFF042O17+           CTAAGAATACAAACTTGTAATCACAAGGTCACAAGTTCAAATCTCAGTCTTCTTGATTTG
                      ____________________________________________________________
consensus             CTAAGAATACAAACTTGTAATCACAAGGTCACAAGTTCAAATCTCAGTCTTCTTGATTTG
 
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JMFF042O17+           AGTTTTTCTCAGAAAAGAAATCAAGAATTTAATACATAAGATACAGCCCCATTGACTCTG
                      ____________________________________________________________
consensus             AGTTTTTCTCAGAAAAGAAATCAAGAATTTAATACATAAGATACAGCCCCATTGACTCTG
 
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JMFF042O17+           ACACAATCCAAAGATTCTTGCTTTTTGTGTTCGATTCAGAGATTCCAAAATCGTTAAAAC
                      ____________________________________________________________
consensus             ACACAATCCAAAGATTCTTGCTTTTTGTGTTCGATTCAGAGATTCCAAAATCGTTAAAAC
 
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JMFF042O17+           TGAAAAGTTAGCTGACCAAGCTCCAGAAAAGAAGATTAATTGATGAAAGAGGGCGCAAAT
                      ____________________________________________________________
consensus             TGAAAAGTTAGCTGACCAAGCTCCAGAAAAGAAGATTAATTGATGAAAGAGGGCGCAAAT
 
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JMFF042O17+           GGAGTAGTGAAATCGCAGAAAAGATGTGCAGAAATGAGAGGGACAAGGCGAGCCCGGAGA
                      ____________________________________________________________
consensus             GGAGTAGTGAAATCGCAGAAAAGATGTGCAGAAATGAGAGGGACAAGGCGAGCCCGGAGA
 
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JMFF042O17+           AAAGGAAAGCCGTCTGACATTGAAAAAGATGAACTCGGTTACCAATACGGAGAAGGAAAC
                      ____________________________________________________________
consensus             AAAGGAAAGCCGTCTGACATTGAAAAAGATGAACTCGGTTACCAATACGGAGAAGGAAAC
 
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JMFF042O17+           GGACAAATACCCAAAGCCGAATCGCAGGTGAGGATTCAGAATCAAATTGTGAGTACACAC
                      ____________________________________________________________
consensus             GGACAAATACCCAAAGCCGAATCGCAGGTGAGGATTCAGAATCAAATTGTGAGTACACAC