| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003F22 | Sequence | 560 | 007459 (10) | ref|XP_006355348.1| | 146 | PREDICTED: uncharacterized protein LOC102586632 [Solanum tuberosum] | 710 | 007459 (10) | ref|XP_009626044.1| | 1e-109 | PREDICTED: oxidation resistance protein 1 [Nicotiana tomentosiformis] |
| JMFF022M23 | Sequence | 229 | 007459 (10) | 732 | 007459 (10) | ref|XP_009626044.1| | 7e-114 | PREDICTED: oxidation resistance protein 1 [Nicotiana tomentosiformis] | |||
| JMFF042E08 | Sequence | 628 | 007459 (10) | ref|XP_006355348.1| | 82.4 | PREDICTED: uncharacterized protein LOC102586632 [Solanum tuberosum] | 608 | 007459 (10) | ref|XP_009626044.1| | 4e-50 | PREDICTED: oxidation resistance protein 1 [Nicotiana tomentosiformis] |
| JMFS072A08 | Sequence | 627 | 007459 (10) | ref|XP_006355348.1| | 188 | PREDICTED: uncharacterized protein LOC102586632 [Solanum tuberosum] | |||||
| JMSF003B20 | Sequence | 257 | 002109 (20) | ref|XP_009592880.1| | 9e-40 | PREDICTED: cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic [Nicoti | 770 | 007459 (10) | ref|XP_009626044.1| | 1e-107 | PREDICTED: oxidation resistance protein 1 [Nicotiana tomentosiformis] |
| JMSF040E18 | Sequence | 678 | 007459 (10) | ref|XP_006355348.1| | 115 | PREDICTED: uncharacterized protein LOC102586632 [Solanum tuberosum] | 825 | 007459 (10) | ref|XP_009626044.1| | 4e-113 | PREDICTED: oxidation resistance protein 1 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF042E08- AGAACTTTTAATTGGTTTATATTTTCAATCGAAGACTATTACATACAACTTGTATG
____________________________________________________________
consensus AGAACTTTTAATTGGTTTATATTTTCAATCGAAGACTATTACATACAACTTGTATG
. : . : . : . : . : . :
rJMFF042E08- AAATTTTTTAACTTTCAAATCTATAAAAGATTTCGAAATCGAAGCCTGCTATATATGACT
____________________________________________________________
consensus AAATTTTTTAACTTTCAAATCTATAAAAGATTTCGAAATCGAAGCCTGCTATATATGACT
. : . : . : . : . : . :
rJMFF042E08- TGTATGAGAATGTGAGGCATGAGATTGAGAAAATTGGTTCTATTGCAAGAATTGAGCAAA
rJMFF003F22- AATTGAGCAAA
rJMFF022M23- AATTGAGCAAA
rJMSF003B20- AA
____________________________________________________________
consensus TGTATGAGAATGTGAGGCATGAGATTGAGAAAATTGGTTCTATTGCAAGAATTGAGCAAA
. : . : . : . : . : . :
rJMFF042E08- GATCAAAGAGTTTCAAACCCAAAAGTTGTTCATTATATACATTATGGTTGAAAACTTGGC
rJMFF003F22- GATCAAAGAGTTTCAAACCCAAAAGTTGTTCATTATATACATTATGGTTGAAAACTTGGC
rJMFF022M23- GATCAAAGAGTTTCAAACCCAAAAGTTGTTCATTATATACATTATGGTTGAAAACTTGGC
rJMSF003B20- GATCAAAGAGTTTCAAACCCAAAAGTTGTTCATTATATACATTATGGTTGAAAACTTGGC
rJMSF040E18- AACCCAAAAGTTGTTCATTATATACATTATGGTTGAAAACTTGGC
____________________________________________________________
consensus GATCAAAGAGTTTCAAACCCAAAAGTTGTTCATTATATACATTATGGTTGAAAACTTGGC
. : . : . : . : . : . :
rJMFF042E08- CAAACTATGAGCACCATCTGCACCCGGTTGAGGTTATTTGAGAAAACGCGAACTGAAATG
rJMFF003F22- CAAACTATGAGCACCATCTGCACCCGGTTGAGGTTATTTGAGAAAACGCGAACTGAAATG
rJMFF022M23- CAAACTATGAGCACCATCTGCACCCGGTTGAGGTTATTTGAGAAAACGCGAACTGAAATG
rJMSF003B20- CAAACTATGAGCACCATCTGCACCCGGTTGAGGTTATTTGAGAAAACGCGAACTGAAATG
rJMSF040E18- CAAACTATGAGCACCATCTGCACCCGGTTGAGGTTATTTGAGAAAACGCGAACTGAAATG
____________________________________________________________
consensus CAAACTATGAGCACCATCTGCACCCGGTTGAGGTTATTTGAGAAAACGCGAACTGAAATG
. : . : . : . : . : . :
rJMFF042E08- CAGCACGCCTTGCCTGAGCAATGTTCAAAAGCGGCAGATTCCAGGTGCCTCAGTTCGCAG
rJMFF003F22- CAGCACGCCTTGCCTGAGCAATGTTCAAAAGCGGCAGATTCCAGGTGCCTCAGTTCGCAG
rJMFF022M23- CAGCACGCCTTGCCTGAGCAATGTTCAAAAGCGGCAGATTCCAGGTGCCTCAGTTCGCAG
rJMSF003B20- CAGCACGCCTTGCCTGAGCAATGTTCAAAAGCGGCAGATTCCAGGTGCCTCAGTTCGCAG
rJMSF040E18- CAGCACGCCTTGCCTGAGCAATGTTCAAAAGCGGCAGATTCCAGGTGCCTCAGTTCGCAG
____________________________________________________________
consensus CAGCACGCCTTGCCTGAGCAATGTTCAAAAGCGGCAGATTCCAGGTGCCTCAGTTCGCAG
. : . : . : . : . : . :
rJMFF042E08- GACTGAGAGTATCTCTTCGTACTTTGAAGCATATACGAAACCCCATAACTCAACCTCCTT
rJMFF003F22- GACTGAGAGTATCTCTTCGTACTTTGAAGCATATACGAAACCCCATAACTCAACCTCCTT
rJMFF022M23- GACTGAGAGTATCTCTTCGTACTTTGAAGCATATACGAAAGCCCATAACTCAACCTCCTT
rJMSF003B20- GACTGAGAGTATCTCTTCGTACTTTGAAGCATATACGAAACCCCATAACTCAACCTCCTT
rJMSF040E18- GACTGAGAGTATCTCTTCGTACTTTGAAGCATATACGAAACCCCATAACTCAACCTCCTT
____________________________________________________________
consensus GACTGAGAGTATCTCTTCGTACTTTGAAGCATATACGAAACCCCATAACTCAACCTCCTT
. : . : . : . : . : . :
rJMFF042E08- CACTTCAAAATCTTCACTGCATGACAAGCACGAGTTTCCATAGGTTTGTGAAGCTGCACT
rJMFF003F22- CACTTCAAAATCTTCACTGCATGACAAGCACGAGTTTCCATAGGTTTGTGAAGCTGCACT
rJMFF022M23- CACTTCAAAATCTTCACTGCATGACAAGCACGAGTTTCCATAGGTTTGTGAAGCTGCACT
rJMSF003B20- CACTTCAAAATCTTCACTGCATGACAAGCACGAGTTTCCATAGGTTTGTGAAGCTGCACT
rJMSF040E18- CACTTCAAAATCTTCACTGCATGACAAGCACGAGTTTCCATAGGTTTGTGAAGCTGCACT
____________________________________________________________
consensus CACTTCAAAATCTTCACTGCATGACAAGCACGAGTTTCCATAGGTTTGTGAAGCTGCACT
. : . : . : . : . : . :
rJMFF042E08- TGATCCGGTCAGGAGATCCCCATCCAAGTAGAGAGCAAAATGACCACCACCGCCCAAGGC
rJMFF003F22- TGATCCGGTCAGGAGATCCCCATCCAAGTAGAGAGCAAAATGACCACCACCGCCCAAGGC
rJMFF022M23- TGATCCGGTCAGGAGATCCCCATCCAAGTAGAGAGCAAAATGACCACCACCGCCCAAGGC
rJMSF003B20- TGATCCGGTCAGGAGATCCCCATCCAAGTAGAGAGCAAAATGACCACCACCGCCCAAGGC
rJMSF040E18- TGATCCGGTCAGGAGATCCCCATCCAAGTAGAGAGCAAAATGACCACCACCGCCCAAGGC
____________________________________________________________
consensus TGATCCGGTCAGGAGATCCCCATCCAAGTAGAGAGCAAAATGACCACCACCGCCCAAGGC
. : . : . : . : . : . :
rJMFF042E08- TATGTACTCTGTGGAGCACATAGTATAATAGCGATTCATGCCTGTAGGACGAAATATAGT
rJMFF003F22- TATGTACTCTGTGGAGCACATAGTATAATAGCGATTCATGCCTGTAGGACGAAATATAGT
rJMFF022M23- TATGTACTCTGTGGAGCACATAGTATAATAGCGATTCATGCCTGTAGGACGAAATATAGT
rJMSF003B20- TATGTACTCTGTGGAGCACATAGTATAATAGCGATTCATGCCTGTAGGACGAAATATAGT
rJMSF040E18- TATGTACTCTGTGGAGCACATAGTATAATAGCGATTCATGCCTGTAGGACGAAATATAGT
____________________________________________________________
consensus TATGTACTCTGTGGAGCACATAGTATAATAGCGATTCATGCCTGTAGGACGAAATATAGT
. : . : . : . : . : . :
rJMFF042E08- AGGATGACCTGA
rJMFF003F22- AGGATGACCTGATACATTCGTGAAAACAAATGAAGCATTCGTTCCCTGATATCTTCTCTT
rJMFF022M23- AGGATGACCTGATACATTCGTGAAAACAAATGAAGCATTCGTTCCCTGATATCTTCTCTT
rJMSF003B20- AGGATGACCTGATACATTCGTGAAAACAAATGAAGCATTCGTTCCCTGATATCTTCTCTT
rJMSF040E18- AGGATGACCTGATACATTCGTGAAAACAAATGAAGCATTCGTTCCCTGATATCTTCTCTT
____________________________________________________________
consensus AGGATGACCTGATACATTCGTGAAAACAAATGAAGCATTCGTTCCCTGATATCTTCTCTT
. : . : . : . : . : . :
rJMFF003F22- AGTTGTTGCCCTTAGAGGTGCCTCAACTAGCCCACCAAATACAGTACCCTTACGGTCTCC
rJMFF022M23- AGTTGTTGCCCTTAGAGGTGCCTCAACTAGCCCACCAAATACAGTACCCTTACGGTCTCC
rJMSF003B20- AGTTGTTGCCCTTAGAGGTGCCTCAACTAGCCCACCAAATACAGTACCCTTACGGTCTCC
rJMSF040E18- AGTTGTTGCCCTTAGAGGTGCCTCAACTAGCCCACCAAATACAGTACCCTTACGGTCTCC
____________________________________________________________
consensus AGTTGTTGCCCTTAGAGGTGCCTCAACTAGCCCACCAAATACAGTACCCTTACGGTCTCC
. : . : . : . : . : . :
rJMFF003F22- TACAACCAGAAGACTGAGGCCAGGCCATAGCATGCTTCTCCTGTACAAAGTGGAAAGTGA
rJMFF022M23- TACAACCAGAAGACTGAGGCCAGGCCATAGCATGCTTCTCCTGTACAAAGTGGAAAGTGA
rJMSF003B20- TACAACCAGAAGACTGAGGCCAGGCCATAGCATGCTTCTCCTGTACAAAGTGGAAAGTGA
rJMSF040E18- TACAACCAGAAGACTGAGGCCAGGCCATAGCATGCTTCTCCTGTACAAAGTGGAAAGTGA
____________________________________________________________
consensus TACAACCAGAAGACTGAGGCCAGGCCATAGCATGCTTCTCCTGTACAAAGTGGAAAGTGA
. : . : . : . : . : . :
rJMFF003F22- TATGCCATTCCTCCATGTACTATAGAGCATCACCCATTTCCGGTCCTTAACAAGTGCTGG
rJMFF022M23- TATGCCATTCCTCCATGTACTATAGAGCATCACCCATTTCCGGTCCTTAACAAGTGCTGG
rJMSF003B20- TATGCCATTCCTCCATGTACTATAGAGCATCACCCATTTCCGGTCCTTAACAAGTGCTGG
rJMSF040E18- TATGCCATTCCTCCATGTACTATAGAGCATCACCCATTTCCGGTCCTTAACAAGTGCTGG
JMFS072A08+ TCCTCCATGTACTATAGAGCATCACCCATTTCCGGTCCTTAACAAGTGCTGG
____________________________________________________________
consensus TATGCCATTCCTCCATGTACTATAGAGCATCACCCATTTCCGGTCCTTAACAAGTGCTGG
. : . : . : . : . : . :
rJMFF003F22- AAGTGCAGTGTAAAGAGCTGTTCGTGTCTTCTCTGAGAG
rJMFF022M23- AAGTGCAGTGTAAAGAGCTGTTCGTGTCTTCTCTGAGAGAAGCAACGAAGGTTCAGAAGT
rJMSF003B20- AAGTGCAGTGTAAAGAGCTGTTCGTGTCTTCTCTGAGAGAAGCAACGAGGGTTCAGAAGT
rJMSF040E18- AAGTGCAGTGTAAAGAGCTGTTCGTGTCTTCTCTGAGAGAAGCAACGAGGGTTCAGAAGT
JMFS072A08+ AAGTGCAGTGTAAAGAGCTGTTCGTGTCTTCTCTGAGAGAAGCAACGAGGGTTCAGAAGT
____________________________________________________________
consensus AAGTGCAGTGTAAAGAGCTGTTCGTGTCTTCTCTGAGAGAAGCAACGAGGGTTCAGAAGT
. : . : . : . : . : . :
rJMFF022M23- T
rJMSF003B20- TTCAGGAAGATTGCTTGAAGGCACTTCCTCATTCTTATCTTGCTTAA
rJMSF040E18- TTCAGGAAGATTGCTTGAAGGCACTTCCTCATTCTTATCTTGCTTAAGGATTCCCTCAGG
JMFS072A08+ TTCAGGAAGATTGCTTGAAGGCACTTCCTCATTCTTATCTTGCTTAAGGATTCCCTCAGG
____________________________________________________________
consensus TTCAGGAAGATTGCTTGAAGGCACTTCCTCATTCTTATCTTGCTTAAGGATTCCCTCAGG
. : . : . : . : . : . :
rJMSF040E18- TCTATCAACTTTGGAATTACTTCCATCATCAATCCCCATGTCAG
JMFS072A08+ TCTATCAACTTTGGAATTACTTCCATCATCAATCCCCATGTCAGAGTTT-CCCTTGCTTG
JMFF003F22+ GAATTACTTCCATCATCAATCCCCATGTCAGAGTTTCCCCTTGCTTG
____________________________________________________________
consensus TCTATCAACTTTGGAATTACTTCCATCATCAATCCCCATGTCAGAGTTTCCCCTTGCTTG
. : . : . : . : . : . :
JMFS072A08+ ATCCCTGATTCCGGAATCCACCCAATCTAGCAACTTGGTAAACCGCCCTGCCTATCGTCT
JMFF003F22+ ATCCCTGATTCCGGAATCCACCCAATCTAGCAACTTGGTAAACCGCCCTGCCTATCGTCT
JMSF040E18+ TGGTAAACCGCCCTGCCTATCGTCT
____________________________________________________________
consensus ATCCCTGATTCCGGAATCCACCCAATCTAGCAACTTGGTAAACCGCCCTGCCTATCGTCT
. : . : . : . : . : . :
JMFS072A08+ GTTTGCCCCTCGTGATAAAACTTCTCCTTCTGCTAGGTTCCTTCACCGGTGGCTCAGATG
JMFF003F22+ GTTTGCCCCTCGTGATAAAACTTCTCCTTCTGCTAGGTTCCTTCACCGGTGGCTCAGATG
JMSF040E18+ GTTTGCCCCTCGTGATAAAACTTCTCCTTCTGCTAGGTTCCTTCACCGGTGGCTCAGATG
____________________________________________________________
consensus GTTTGCCCCTCGTGATAAAACTTCTCCTTCTGCTAGGTTCCTTCACCGGTGGCTCAGATG
. : . : . : . : . : . :
JMFS072A08+ GTTCAGCTTTATCATCTTGCTTCTCATTGTTCCCATTCAAACTAGAGTGACTACCAGGCT
JMFF003F22+ GTTCAGCTTTATCATCTTGCTTCTCATTGTTCCCATTCAAACTAGAGTGACTACCAGGCT
JMSF040E18+ GTTCAGCTTTATCATCTTGCTTCTCATTGTTCCCATTCAAACTAGAGTGACTACCAGGCT
JMFF042E08+ CCATTCAAACTAGAGTGACTACCAGGCT
____________________________________________________________
consensus GTTCAGCTTTATCATCTTGCTTCTCATTGTTCCCATTCAAACTAGAGTGACTACCAGGCT
. : . : . : . : . : . :
JMFS072A08+ CTGAATTCGATAGTAGGGAATACAGGAATGCAGTAAATGAGGACGTATCAGGACCGTTAA
JMFF003F22+ CTGAATTCGATAGTAGGGAATACAGGAATGCAGTAAATGAGGACGTATCAGGACCGTTAA
JMSF040E18+ CTGAATTCGATAGTAGGGAATACAGGAATGCAGTAAATGAGGACGTATCAGGACCGTTAA
JMFF042E08+ CTGAATTCGATAGTAGGGAATACAGGAATGCAGTAAATGAGGACGTATCAGGACCGTTAA
____________________________________________________________
consensus CTGAATTCGATAGTAGGGAATACAGGAATGCAGTAAATGAGGACGTATCAGGACCGTTAA
. : . : . : . : . : . :
JMFS072A08+ CTATATCCCCAGGCTCCCCCTCATCCAACTCCAGTTTACTTCCCTCAGAATCTGATCCAT
JMFF003F22+ CTATATCCCCAGGCTCCCCCTCATCCAACTCCAGTTTACTTCCCTCAGAATCTGATCCAT
JMSF040E18+ CTATATCCCCAGGCTCCCCCTCATCCAACTCCAGTTTACTTCCCTCAGAATCTGATCCAT
JMFF042E08+ CTATATCCCCAGGCTCCCCCTCATCCAACTCCAGTTTACTTCCCTCAGAATCTGATCCAT
____________________________________________________________
consensus CTATATCCCCAGGCTCCCCCTCATCCAACTCCAGTTTACTTCCCTCAGAATCTGATCCAT
. : . : . : . : . : . :
JMFS072A08+ CTTCAGGTACCGGCGGCGGTCTAGGTTTGCGTTTGGAGGGCTTATCGGAGATTGGATTGA
JMFF003F22+ CTTCAGGTACCGGCGGCGGTCTAGGTTTGCGTTTGGAGGGCTTATCGGAGATTGGATTGA
JMSF040E18+ CTTCAGGTACCGGCGGCGGTCTAGGTTTGCGTTTGGAGGGCTTATCGGAGATTGGATTGA
JMFF042E08+ CTTCAGGTACCGGCGGCGGTCTAGGTTTGCGTTTGGAGGGCTTATCGGAGATTGGATTGA
____________________________________________________________
consensus CTTCAGGTACCGGCGGCGGTCTAGGTTTGCGTTTGGAGGGCTTATCGGAGATTGGATTGA
. : . : . : . : . : . :
JMFS072A08+ GGATGACGGTGGTAAGATCAGATACAAAGTGCGCCG
JMFF003F22+ GGATGACGGTGGTAAGATCAGATACAAAGTGCGCCGCTTTACTCCTCAGAGACCGATTCT
JMSF040E18+ GGATGACGGTGGTAAGATCAGATACAAAGTGCGCCGCTTTACTCCTCAGAGACCGATTCT
JMFF042E08+ GGATGACGGTGGTAAGATCAGATACAAAGTGCGCCGCTTTACTCCTCAGAGACCGATTCT
____________________________________________________________
consensus GGATGACGGTGGTAAGATCAGATACAAAGTGCGCCGCTTTACTCCTCAGAGACCGATTCT
. : . : . : . : . : . :
JMFF003F22+ TATGCTCTAGCAGCGGCGGTGGCGACCACTTCTCTTCTTCTTCTTCTACTTCTCTGCCCA
JMSF040E18+ TATGCTCTAGCAGCGGCGGTGGCGACCACTTCTCTTCTTCTTCTTCTACTTCTCTGCCCA
JMFF022M23+ CTTCTCTGCCCA
JMFF042E08+ TATGCTCTAGCAGCGGCGGTGGCGACCACTTCTCTTCTTCTTCTTCTACTTCTCTGCCCA
____________________________________________________________
consensus TATGCTCTAGCAGCGGCGGTGGCGACCACTTCTCTTCTTCTTCTTCTACTTCTCTGCCCA
. : . : . : . : . : . :
JMFF003F22+ TTTTGTGCTCCAAATTGCTCCCTAAATTAGTAC
JMSF040E18+ TTTTGTGCTCCAAATTGCTCCCTAAATTAGTACTCCGCCCTCCATAGTGCCATTATTCTC
JMFF022M23+ TTTTGTGCTCCAAATTGCTCCCTAAATTAGTACTCCGCCCTCCATAGTGCCATTATTCTC
JMFF042E08+ TTTTGTGCTCCAAATTGCTCCCTAAATTAGTACTCCGCCCTCCATAGTGCCATTATTCTC
____________________________________________________________
consensus TTTTGTGCTCCAAATTGCTCCCTAAATTAGTACTCCGCCCTCCATAGTGCCATTATTCTC
. : . : . : . : . : . :
JMSF040E18+ TGTATGATTAGATTTCCACTACCTTTTTCTATCGTGATGCTTCAAAGCAGAATCTGCACG
JMFF022M23+ TGTATGATTAGATTTCCACTACCTTTTTCTATCGTGATGCTTCAAAGCAGAATCTGCACG
JMFF042E08+ TGTATGATTAGATTTCCACTACCTTTTTCTATCGTGATGCTTCAAAGCAGAATCTGCACG
____________________________________________________________
consensus TGTATGATTAGATTTCCACTACCTTTTTCTATCGTGATGCTTCAAAGCAGAATCTGCACG
. : . : . : . : . : . :
JMSF040E18+ CCTTCCGTCACCTTTCAAATAAACAAAAAACTCAGAATTTTTTCCATCTTTCCCCCTTTT
JMFF022M23+ CCTTCCGTCACCTTTCAAATAAACAAAAAACTCAGAATTTTTTCCATCTTTCCCCCTTTT
JMFF042E08+ CCTTCCGTCACCTTTCAAATAAACAAAAAACTCAGAATTTTTTCCATCTTTCCCCCTTTT
____________________________________________________________
consensus CCTTCCGTCACCTTTCAAATAAACAAAAAACTCAGAATTTTTTCCATCTTTCCCCCTTTT
. : . : . : . : . : . :
JMSF040E18+ CTTTGGAATTATCGAGAAATCGAAGATGGAGTCTTTGAAGCTAATTCTCT
JMFF022M23+ CTTTGGAATTATCGAGAAATCGAAGATGGAGTCTTTG
JMFF042E08+ CTTTGGAATTATCGAGAAATCGAAGATGGAGTCTTTGAAGCTAATTCTCTTTGGTTCAGT
____________________________________________________________
consensus CTTTGGAATTATCGAGAAATCGAAGATGGAGTCTTTGAAGCTAATTCTCTTTGGTTCAGT
. : . : . : . : . : . :
JMFF042E08+ CGTGAATTAGTCTTTCAGAAATATCAATTCCTTCGTTTTGCCCAAGTCCACGTCCACCAT
____________________________________________________________
consensus CGTGAATTAGTCTTTCAGAAATATCAATTCCTTCGTTTTGCCCAAGTCCACGTCCACCAT