| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003M01 | Sequence | 275 | 007453 (4) | ref|XP_006343987.1| | 5e-04 | PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum] | 741 | 005491 (5) | emb|CDP09740.1| | 2e-81 | unnamed protein product [Coffea canephora] |
| JMFF004P16 | Sequence | 515 | 007453 (4) | ref|XP_006343987.1| | 1e-54 | PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum] | 737 | 005491 (5) | emb|CDP09740.1| | 4e-87 | unnamed protein product [Coffea canephora] |
| JMFF021L17 | Sequence | 539 | 007453 (4) | ref|XP_006343987.1| | 3e-60 | PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum] | 748 | 005491 (5) | emb|CDP09740.1| | 3e-82 | unnamed protein product [Coffea canephora] |
| JMFF041I07 | Sequence | 592 | 007453 (4) | ref|XP_006343987.1| | 8e-73 | PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum] | 471 | 005491 (5) | gb|AFF18843.1| | 1e-25 | gamma-glutamylcysteine synthetase, partial [Dimocarpus longan] |
This contig is upended
. : . : . : . : . : . :
JMFF021L17+ TTT
JMFF041I07+ AAGCTCAAATTGACCACCAGGCTCCAACGATATACTTTGCTTTCCCTGTTTT
____________________________________________________________
consensus AAGCTCAAATTGACCACCAGGCTCCAACGATATACTTTGCTTTCCCTGTTTT
. : . : . : . : . : . :
JMFF021L17+ AGCCCAATAATTTTGTCACCTTCCATTATTTTATCCCAATCAAATCTCTCAGAAATGCCA
JMFF004P16+ TCCATTATTTTATCCCAATCAAATCTCTCAGAAATGCCA
JMFF041I07+ AGCCCAATAATTTTGTCACCTTCCATTATTTTATCCCAATCAAATCTCTCAGAAATGCCA
____________________________________________________________
consensus AGCCCAATAATTTTGTCACCTTCCATTATTTTATCCCAATCAAATCTCTCAGAAATGCCA
. : . : . : . : . : . :
JMFF021L17+ TTAAGCAACTCAGCTATTTGTTCATACTTCATAGGCCGCAGAGTCTCAAACTCAAAACCA
JMFF004P16+ TTAAGCAACTCAGCTATTTGTTCATACTTCATAGGCCGCAGAGTCTCAAACTCAAAACCA
JMFF041I07+ TTAAGCAACTCAGCTATTTGTTCATACTTCATAGGCCGCAGAGTCTCAAACTCAAAACCA
____________________________________________________________
consensus TTAAGCAACTCAGCTATTTGTTCATACTTCATAGGCCGCAGAGTCTCAAACTCAAAACCA
. : . : . : . : . : . :
JMFF021L17+ AACTTTTCATGCTCTGTACCTATCCTCCATTTTTCTTTTGTCTTGCATCCAGAAGCAAGA
JMFF004P16+ AACTTTTCATGCTCTGTACCTATCCTCCATTTTTCTTTTGTCTTGCATCCAGAAGCAAGA
JMFF041I07+ AACTTTTCATGCTCTGTACCTATCCTCCATTTTTCTTTTGTCTTGCATCCAGAAGCAAGA
____________________________________________________________
consensus AACTTTTCATGCTCTGTACCTATCCTCCATTTTTCTTTTGTCTTGCATCCAGAAGCAAGA
. : . : . : . : . : . :
JMFF021L17+ TATCCAACGAGGTCTTCTTTCGTTAACGGCTCTGCAGCAGTAACAACATCCTCCGTTGGA
JMFF004P16+ TATCCAACGAGGTCTTCTTTCGTTAACGGCTCTGCAGCAGTAACAACATCCTCCGTTGGA
JMFF041I07+ TATCCAACGAGGTCTTCTTTCGTTAACGGCTCTGCAGCAGTAACAACATCCTCCGTTGGA
____________________________________________________________
consensus TATCCAACGAGGTCTTCTTTCGTTAACGGCTCTGCAGCAGTAACAACATCCTCCGTTGGA
. : . : . : . : . : . :
JMFF021L17+ GGACTTGCAGCAACAGTCAACCCCCCGTGTCCTCGTCTAGATTCCAAACGCAACCCTTGC
JMFF003M01+ CCGTGTCNTCGTNTAGATTCCAAACGCAACCCTTGC
JMFF004P16+ GGACTTGCAGCAACAGTCAACCCCCCGTGTCCTCGTCTAGATTCCAAACGCAACCCTTGC
JMFF041I07+ GGACTTGCAGCAACAGTCAACCCCCCGTGTCCTCGTCTAGATTCCAAACGCAACCCTTGC
____________________________________________________________
consensus GGACTTGCAGCAACAGTCAACCCCCCGTGTCCTCGTCTAGATTCCAAACGCAACCCTTGC
. : . : . : . : . : . :
JMFF021L17+ ATACCCTTTGATGAACTCCGCGAAGAGGAAGAGAAACCAAAACCAATTTCATTCCTTTTG
JMFF003M01+ ATACCCTTTGATGAACTCCGCGAAGAGGAAGAGAAACCAAAACCAATTTCATTCCTTTTG
JMFF004P16+ ATACCCTTTGATGAACTCCGCGAAGAGGAAGAGAAACCAAAACCAATTTCATTCCTTTTG
JMFF041I07+ ATACCCTTTGATGAACTCCGCGAAGAGGAAGAGAAACCAAAACCAATTTCATTCCTTTTG
____________________________________________________________
consensus ATACCCTTTGATGAACTCCGCGAAGAGGAAGAGAAACCAAAACCAATTTCATTCCTTTTG
. : . : . : . : . : . :
JMFF021L17+ AACATCTCCATACTGTTCACAACACCTTTACATTTTACCACTTCTGAATGCATGCCATAT
JMFF003M01+ AACATCTCCATACTGTTCACAACACCTTTACATTTTACCACTTCTGAATGCATGCCATAT
JMFF004P16+ AACATCTCCATACTGTTCACAACACCTTTACATTTTACCACTTCTGAATGCATGCCATAT
JMFF041I07+ AACATCTCCATACTGTTCACAACACCTTTACATTTTACCACTTCTGAATGCATGCCATAT
____________________________________________________________
consensus AACATCTCCATACTGTTCACAACACCTTTACATTTTACCACTTCTGAATGCATGCCATAT
. : . : . : . : . : . :
JMFF021L17+ GATGGCCCAGACTGGGACATCAACGCCATGCTTTTTGCCTGGATTGAGCAAGCAGAGAGC
JMFF003M01+ GATGGCCCAGACTGGGACATCAACGCCATGCTTTTTGCCTGGATTGAGCAAGCAGAGAGC
JMFF004P16+ GATGGCCCAGACTGGGACATCAACGCCATGCTTTTTGCCTGGATTGAGCAAGCAGAGAGC
JMFF041I07+ GATGGCCCAGACTGGGACATCAACGCCATGCTTTTTGCCTGGATTGAGCAAGCAGAGAGC
____________________________________________________________
consensus GATGGCCCAGACTGGGACATCAACGCCATGCTTTTTGCCTGGATTGAGCAAGCAGAGAGC
. : . : . : . : . : . :
JMFF021L17+ AAGAATTCTAGGGTCTGCGAGAAATTGAGAGATAAATGGTGTGGAGGGAGTAGTAG
JMFF003M01+ AAGAATTCTAGGGTCTGCGAGAAATTGAGAGATAAATGGTGTGGAGGGAGTAGTAG
JMFF004P16+ AAGAATTCTAGGGTCTGCGAGAAATTGAGAGATAAATGGTGTGGAGGGAGTAGTAG
JMFF041I07+ AAGAATTCTAGGGTCTGCGAGAAATTGAGAGATAAATGGTGTGGAGGGAGTAGTAGTCGG
____________________________________________________________
consensus AAGAATTCTAGGGTCTGCGAGAAATTGAGAGATAAATGGTGTGGAGGGAGTAGTAGTCGG