| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035G20 | Sequence | 575 | 007450 (4) | ref|XP_011099633.1| | 6e-44 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 637 | 002655 (4) | ref|XP_004232417.1| | 8e-61 | PREDICTED: tubby-like F-box protein 5 [Solanum lycopersicum] ref|XP_010316378.1| |
| JMFF040H16 | Sequence | 535 | 007450 (4) | ref|XP_011099633.1| | 1e-25 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 688 | 002655 (4) | ref|XP_004232417.1| | 3e-65 | PREDICTED: tubby-like F-box protein 5 [Solanum lycopersicum] ref|XP_010316378.1| |
| JMFF041I02 | Sequence | 639 | 007450 (4) | ref|XP_011099633.1| | 3e-58 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 615 | 002655 (4) | ref|NP_001266362.1| | 5e-55 | uncharacterized protein LOC101202709 [Zea mays] gb|ACF80993.1| unknown [Zea mays |
| JMSF024L18 | Sequence | 643 | 007450 (4) | ref|XP_011099633.1| | 8e-51 | PREDICTED: tubby-like F-box protein 5 [Sesamum indicum] | 765 | 002655 (4) | ref|XP_009779244.1| | 2e-91 | PREDICTED: tubby-like F-box protein 5 [Nicotiana sylvestris] ref|XP_009779245.1| |
This contig is upended
. : . : . : . : . : . :
JMFF041I02+ GAAATGGGAAAGG
____________________________________________________________
consensus GAAATGGGAAAGG
. : . : . : . : . : . :
JMFF041I02+ TTAGCCTCCCGCATTCCTCGGGAGTCTTGACAATGGCCTTAGTGATCTCCCTCCACGACT
JMFF035G20+ TCCACGACT
JMSF024L18+ CTCGGGAGTCTTGACAATGGCCTTAGTGATCTCCCTCCACGACT
____________________________________________________________
consensus TTAGCCTCCCGCATTCCTCGGGAGTCTTGACAATGGCCTTAGTGATCTCCCTCCACGACT
. : . : . : . : . : . :
JMFF041I02+ TACAAACCGATGCACAAAACAGAACCACAGTCCGGGCAGGCCATGATGTCTCGCTCTCTT
JMFF035G20+ TACAAACCGATGCACAAAACAGAACCACAGTCCGGGCAGGCCATGATGTCTCGCTCTCTT
JMSF024L18+ TACAAACCGATGCACAAAACAGAACCACAGTCCGGGCAGGCCATGATGTCTCGCTCTCTT
____________________________________________________________
consensus TACAAACCGATGCACAAAACAGAACCACAGTCCGGGCAGGCCATGATGTCTCGCTCTCTT
. : . : . : . : . : . :
JMFF041I02+ CAACTCTCTGGATTATATCCAACAGCAATTCGGGCGGTAGATTTGCCCACCGCCCCTGCT
JMFF035G20+ CAACTCTCTGGATTATATCCAACAGCAATTCGGGCGGTAGATTTGCCCACCGCCCCTGCT
JMSF024L18+ CAACTCTCTGGATTATATCCAACAGCAATTCGGGCGGTAGATTTGCCCACCGCCCCTGCT
JMFF040H16+ CTCTGGATTNTATCCAACAGCAATTCGGGCGGTAGATTTGCCCACCGCCCCTGCT
____________________________________________________________
consensus CAACTCTCTGGATTATATCCAACAGCAATTCGGGCGGTAGATTTGCCCACCGCCCCTGCT
. : . : . : . : . : . :
JMFF041I02+ CAATTGGATCAGAATGAGCCAAATCGGGAGCTATATGTGATAGCGTCCTACTCCGCCGCC
JMFF035G20+ CAATTGGATCAGAATGAGCCAAATCGGGAGCTATATGTGATAGCGTCCTACTCCGCCGCC
JMSF024L18+ CAATTGGATCAGAATGAGCCAAATCGGGAGCTATATGTGATAGCGTCCTACTCCGCCGCC
JMFF040H16+ CAATTGGATCAGAATGAGCCAAATCGGGAGCTATATGTGATAGCGTCCTACTCCGCCGCC
____________________________________________________________
consensus CAATTGGATCAGAATGAGCCAAATCGGGAGCTATATGTGATAGCGTCCTACTCCGCCGCC
. : . : . : . : . : . :
JMFF041I02+ ATTGCCTCCCTTCCAACCCTCTCCTCGACATGCTCCCTATCCCGTCTTTCATCTCCCTCA
JMFF035G20+ ATTGCCTCCCTTCCAACCCTCTCCTCGACATGCTCCCTATCCCGTCTTTCATCTCCCTCA
JMSF024L18+ ATTGCCTCCCTTCCAACCCTCTCCTCGACATGCTCCCTATCCCGTCTTTCATCTCCCTCA
JMFF040H16+ ATTGCCTCCCTTCCAACCCTCTCCTCGACATGCTCCCTATCCCGTCTTTCATCTCCCTCA
____________________________________________________________
consensus ATTGCCTCCCTTCCAACCCTCTCCTCGACATGCTCCCTATCCCGTCTTTCATCTCCCTCA
. : . : . : . : . : . :
JMFF041I02+ GCTCGCGCACAATGCTCTTGAACGACATCCCGACTGATCATACCAATCGGGCAATCAAAA
JMFF035G20+ GCTCGCGCACAATGCTCTTGAACGACATCCCGACTGATCATACCAATCGGGCAATCAAAA
JMSF024L18+ GCTCGCGCACAATGCTCTTGAACGACATCCCGACTGATCATACCAATCGGGCAATCAAAA
JMFF040H16+ GCTCGCGCACAATGCTCTTGAACGACATCCCGACTGATCATACCAATCGGGCAATCAAAA
____________________________________________________________
consensus GCTCGCGCACAATGCTCTTGAACGACATCCCGACTGATCATACCAATCGGGCAATCAAAA
. : . : . : . : . : . :
JMFF041I02+ CCTGAGCTAAGAAGATGCAGAGATCGGTGAGAAAACAAAATAGATCGAACAGGCCATTGC
JMFF035G20+ CCTGAGCTAAGAAGATGCAGAGATCGGTGAGAAAACAAAATAGATCGAACAGGCCATTGC
JMSF024L18+ CCTGAGCTAAGAAGATGCAGAGATCGGTGAGAAAACAAAATAGATCGAACAGGCCATTGC
JMFF040H16+ CCTGAGCTAAGAAGATGCAGAGATCGGTGAGAAAACAAAATAGATCGAACAGGCCATTGC
____________________________________________________________
consensus CCTGAGCTAAGAAGATGCAGAGATCGGTGAGAAAACAAAATAGATCGAACAGGCCATTGC
. : . : . : . : . : . :
JMFF041I02+ AGACCGTGTCCTCCCCCACTGACTTGATTACTTGACCCGGCTTCACATTAATCTCTTGGT
JMFF035G20+ AGACCGTGTCCTCCCCCACTGACTTGATTACTTGACCCGGCTTCACATTAATCTCTTGGT
JMSF024L18+ AGACCGTGTCCTCCCCCACTGACTTGATTACTTGACCCGGCTTCACATTAATCTCTTGGT
JMFF040H16+ AGACCGTGTCCTCCCCCACTGACTTGATTACTTGACCCGGCTTCACATTAATCTCTTGGT
____________________________________________________________
consensus AGACCGTGTCCTCCCCCACTGACTTGATTACTTGACCCGGCTTCACATTAATCTCTTGGT
. : . : . : . : . : . :
JMFF041I02+ GGTCGGATTTCACATTGCCGGAACTTACCAGCGCTGCCGCCACCAACGCCGCCGTCTCCT
JMFF035G20+ GGTCGGATTTCACATTGCCGGAACTTACCAGCGCTGCCGCCACCAACGCCGCCGTCTCCT
JMSF024L18+ GGTCGGATTTCACATTGCCGGAACTTACCAGCGCTGCCGCCACCAACGCCGCCGTCTCCT
JMFF040H16+ GGTCGGATTTCACATTGCCGGAACTTACCAGCGCTGCCGCCACCAACGCCGCCGTCTCCT
____________________________________________________________
consensus GGTCGGATTTCACATTGCCGGAACTTACCAGCGCTGCCGCCACCAACGCCGCCGTCTCCT
. : . : . : . : . : . :
JMFF041I02+ CCTTCGCCGTCTGGAAAAAGGTGAAAGCAGAGGTCACGCCACGAGCTGAAAGATAAACAA
JMFF035G20+ CCTTCGCCGTCTGGAAAAAGGTGAAAGCAGAGGTCACGCCACGAGCTGAAAGATAAACAA
JMSF024L18+ CCTTCGCCGTCTGGAAAAAGGTGAAAGCAGAGGTCACGCCACGAGCTGAAAGATAAACAA
JMFF040H16+ CCTTCGCCGTCTGGAAAAAGGTGAAAGCAGAGGTCACGCCACGAGCTGAAAGATAAACAA
____________________________________________________________
consensus CCTTCGCCGTCTGGAAAAAGGTGAAAGCAGAGGTCACGCCACGAGCTGAAAGATAAACAA
. : . : . : . : . : . :
JMFF041I02+ AGCCACCCTCTCTGTCTATCTCTAAT
JMFF035G20+ AGCCACCCTCTCTGTCTATCTCTAAT
JMSF024L18+ AGCCACCCTCTCTGTCTATCTCTAATGGCACCAAACAAAAATTTAGCAAGACTTCAAG
JMFF040H16+ AGCCACCCTCTCTGTCTATCTCTAATGGCACCAAACAAAAATTTAGCAAGACTTCAAGAC
____________________________________________________________
consensus AGCCACCCTCTCTGTCTATCTCTAATGGCACCAAACAAAAATTTAGCAAGACTTCAAGAC