| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF040G16 | Sequence | 584 | 007449 (8) | emb|CDP07560.1| | 4e-105 | unnamed protein product [Coffea canephora] | 749 | 007449 (8) | emb|CDP07560.1| | 7e-127 | unnamed protein product [Coffea canephora] |
| JMFF042H07 | Sequence | 604 | 007449 (8) | emb|CDP07560.1| | 2e-128 | unnamed protein product [Coffea canephora] | 620 | 007449 (8) | emb|CDP07560.1| | 3e-83 | unnamed protein product [Coffea canephora] |
| JMFN036D10 | Sequence | 554 | 007449 (8) | emb|CDP07560.1| | 3e-70 | unnamed protein product [Coffea canephora] | |||||
| JMFN040I09 | Sequence | 536 | 007449 (8) | emb|CDP07560.1| | 3e-62 | unnamed protein product [Coffea canephora] | |||||
| JMSF018L09 | Sequence | 581 | 007449 (8) | emb|CDP07560.1| | 8e-106 | unnamed protein product [Coffea canephora] | 790 | 007449 (8) | emb|CDP07560.1| | 2e-127 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFN040I09+ GGAAAAGAGGTGCA
rJMFF042H07- GGGGAAAAGAGGTGCA
____________________________________________________________
consensus GGGGAAAAGAGGTGCA
. : . : . : . : . : . :
JMFN036D10+ TTAATAAGCAAATTCATCCAAGCAGAGGTCTAAAAACTTTGAATCTCTTACAA
JMFN040I09+ AGCAGGGTTAATAAGCAAATTCATCCAAGCAGAGGTCTAAAAACTTTGAATCTCTTACAA
rJMFF042H07- AGCAGGGTTAATAAGCAAATTCATCCAAGCAGAGGTCTAAAAACTTTGAATCTCTTACAA
rJMFF040G16- A
rJMSF018L09- A
____________________________________________________________
consensus AGCAGGGTTAATAAGCAAATTCATCCAAGCAGAGGTCTAAAAACTTTGAATCTCTTACAA
. : . : . : . : . : . :
JMFN036D10+ ATAATTTACCCAAATAAGTCATCACATAGCATACAATCAACAGCTTTCTGCAGGGTCTCA
JMFN040I09+ ATAATTTACCCAAATAAGTCATCACATAGCATACAATCAACAGCTTTCTGCAGGGTCTCA
rJMFF042H07- ATAATTTACCCAAATAAGTCATCACATAGCATACAATCAACAGCTTTCTGCAGGGTCTCA
rJMFF040G16- ATAATTTACCCAAATAAGTCATCACATAGCATACAATCAACAGCTTTCTGCAGGGTCTCA
rJMSF018L09- ATAATTTACCCAAATAAGTCATCACATAGCATACAATCAACAGCTTTCTGCAGGGTCTCA
____________________________________________________________
consensus ATAATTTACCCAAATAAGTCATCACATAGCATACAATCAACAGCTTTCTGCAGGGTCTCA
. : . : . : . : . : . :
JMFN036D10+ TTTATGCATAGATATAAAGAAAAAGCGCACCCAATCTATTGCAGAATCCACCCACGAGAT
JMFN040I09+ TTTATGCATAGATATAAAGAAAAAGCGCACCCAATCTATTGCAGAATCCACCCACGAGAT
rJMFF042H07- TTTATGCATAGATATAAAGAAAAAGCGCACCCAATCTATTGCAGAATCCACCCACGAGAT
rJMFF040G16- TTTATGCATAGATATAAAGAAAAAGCGCACCCAATCTATTGCAGAATCCACCCACGAGAT
rJMSF018L09- TTTATGCATAGATATAAAGAAAAAGCGCACCCAATCTATTGCAGAATCCACCCACGAGAT
____________________________________________________________
consensus TTTATGCATAGATATAAAGAAAAAGCGCACCCAATCTATTGCAGAATCCACCCACGAGAT
. : . : . : . : . : . :
JMFN036D10+ GTTTCTTCACAATACTTTCTGACCTTACAGCACCGGGCAGGGACTCACTCTATACGCACC
JMFN040I09+ GTTTCTTCACAATACTTTCTGACCTTACAGCACCGGGCAGGGACTCACTCTATACGCACC
rJMFF042H07- GTTTCTTCACAATACTTTCTGACCTTACAGCACCGGGCAGGGACTCACTCTATACGCACC
rJMFF040G16- GTTTCTTCACAATACTTTCTGACCTTACAGCACCGGGCAGGGACTCACTCTATACGCACC
JMFF042H07+ CGGGCAGGGACTCACTCTATACGCACC
rJMSF018L09- GTTTCTTCACAATACTTTCTGACCTTACAGCACCGGGCAGGGACTCACTCTATACGCACC
____________________________________________________________
consensus GTTTCTTCACAATACTTTCTGACCTTACAGCACCGGGCAGGGACTCACTCTATACGCACC
. : . : . : . : . : . :
JMFN036D10+ GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
JMFN040I09+ GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
rJMFF042H07- GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
rJMFF040G16- GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
JMFF042H07+ GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
rJMSF018L09- GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
____________________________________________________________
consensus GAGGAAAGAATGTCTGTCCCACGTATCCTCCTGCCATCGCCCTTCTCACATTGGACTCGA
. : . : . : . : . : . :
JMFN036D10+ ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
JMFN040I09+ ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
rJMFF042H07- ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
rJMFF040G16- ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
JMFF042H07+ ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
rJMSF018L09- ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
JMSF018L09+ CCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
JMFF040G16+ CCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
____________________________________________________________
consensus ACAACTTTGGGTTGTCCCTCAACACAGCAGCAGCGTCTGGATTAAGAGGATCCTCGTGAT
. : . : . : . : . : . :
JMFN036D10+ TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
JMFN040I09+ TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
rJMFF042H07- TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
rJMFF040G16- TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
JMFF042H07+ TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
rJMSF018L09- TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
JMSF018L09+ TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
JMFF040G16+ TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
____________________________________________________________
consensus TGGGTTCCGTGAAGAGATGATACAGGCCATATATTATCGTGTTAATATTCAACACAGGTT
. : . : . : . : . : . :
JMFN036D10+ TCCAGTCTTCTCGAAGAATGTTAAGACAGACCCCTCCCTCCAAGTCAATATTTGGATGGT
JMFN040I09+ TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
rJMFF042H07- TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
rJMFF040G16- TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
JMFF042H07+ TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
rJMSF018L09- TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
JMSF018L09+ TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
JMFF040G16+ TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
____________________________________________________________
consensus TCCAGTCTTCTCGAAGAATGTTAAGACAGACATTTCCCTCCAAGTCAATATTTGGATGGT
. : . : . : . : . : . :
JMFN036D10+ AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
JMFN040I09+ AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGA
rJMFF042H07- AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
rJMFF040G16- AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
JMFF042H07+ AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
rJMSF018L09- AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
JMSF018L09+ AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
JMFF040G16+ AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
____________________________________________________________
consensus AAACCTTCGTCTTGCATTTAACCTTTGGTGCTTCATGAGGATATATAGGAGAAATATGGA
. : . : . : . : . : . :
JMFN036D10+ AAGAGAATACGAATGTGC
rJMFF042H07- AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
rJMFF040G16- AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
JMFF042H07+ AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
rJMSF018L09- AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
JMSF018L09+ AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
JMFF040G16+ AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
____________________________________________________________
consensus AAGAGAATACGAATGTGCCACCTAAGTAGTATCCTTCATCGGGCTTAATGGTAACTTCAA
. : . : . : . : . : . :
rJMFF042H07- AGTT
rJMFF040G16- AGTTCATTAGATCATCTTTGCCATTAGGGAATGATATACTACATGTTTTTGGTAGATTTA
JMFF042H07+ AGTTCATTAGATCATCTTTGCCATTAGGGAATGATATACTACATGTTTTTGGTAGATTTA
rJMSF018L09- AGTTCATTAGATCATCTTTGCCATTAGGGAATGATATACTACATGTTTTTGGTAGATTTA
JMSF018L09+ AGTTCATTAGATCATCTTTGCCATTAGGGAATGATATACTACATGTTTTTGGTAGATTTA
JMFF040G16+ AGTTCATTAGATCATCTTTGCCATTAGGGAATGATATACTACATGTTTTTGGTAGATTTA
____________________________________________________________
consensus AGTTCATTAGATCATCTTTGCCATTAGGGAATGATATACTACATGTTTTTGGTAGATTTA
. : . : . : . : . : . :
rJMFF040G16- ACTCACTTATCTCTTTATGAAGACGCAATTCTCCTGCACTTTGCTTCTTCACTGGTGGCT
JMFF042H07+ ACTCACTTATATCTTTATGAAGACGCAATTCTCCTGCACTTTGCTTCTTCACTGGTGGCT
rJMSF018L09- ACTCACTTATATCTTTATGAAGACGCAATTCTCCTGCACTTTGCTTCTTCACTGGTGGCT
JMSF018L09+ ACTCACTTATATCTTTATGAAGACGCAATTCTCCTGCACTTTGCTTCTTCACTGGTGGCT
JMFF040G16+ ACTCACTTATCTCTTTATGAAGACGCAATTCTCCTGCACTTTGCTTCTTCACTGGTGGCT
____________________________________________________________
consensus ACTCACTTATATCTTTATGAAGACGCAATTCTCCTGCACTTTGCTTCTTCACTGGTGGCT
. : . : . : . : . : . :
rJMFF040G16- TCCCATTTGCATTTTCAGCAAGCTCCCTTTGCTTTTCCTTAACTTTAAATAACTTAATCA
JMFF042H07+ TCCCATTTGCATTTTCAGCAAGCTCCCTTTGCTTTTCCTTAACTTTAAATAACTTAATCA
rJMSF018L09- TCCCATTTGCATTTTCAGCAAGCTCCCTTTGCTTTTCCTTAACTTTAAATAACTTAATCA
JMSF018L09+ TCCCATTTGCATTTTCAGCAAGCTCCCTTTGCTTTTCCTTAACTTTAAATAACTTAATCA
JMFF040G16+ TCCCATTTGCATTTTCAGCAAGCTCCCTTTGCTTTTCCTTAACTTTAAATAACTTAATCA
____________________________________________________________
consensus TCCCATTTGCATTTTCAGCAAGCTCCCTTTGCTTTTCCTTAACTTTAAATAACTTAATCA
. : . : . : . : . : . :
rJMFF040G16- TGGTCTCTATTGGATG
JMFF042H07+ TGGTCTCTATTGGATGAGAAGCTGAGGATTAAC
rJMSF018L09- TGGTCTCTATTGGATGAGAAGCTGAGGATTAACAGTAACAGGCCTCAATCCTCA
JMSF018L09+ TGGTCTCTATTGGATGAGAAGCTGAGGATTAACAGTAACAGGCCTCAATCCTCAGAAAGA
JMFF040G16+ TGGTCTCTATTGGATGAGAAGCTGAGGATTAACAGTAACAGGCCTCAATCCTCAGAAAGA
____________________________________________________________
consensus TGGTCTCTATTGGATGAGAAGCTGAGGATTAACAGTAACAGGCCTCAATCCTCAGAAAGA
. : . : . : . : . : . :
JMSF018L09+ AGAGGCTCTCTTATCGAATGATGAGAGAGAAATGAAGATTGAAGCGAATCTGAGAC
JMFF040G16+ AGAGGCTCTCTTATCGAATGATGAGAGAGAAATGAAGATTGAAGCGAATCTGAGACAGAG
____________________________________________________________
consensus AGAGGCTCTCTTATCGAATGATGAGAGAGAAATGAAGATTGAAGCGAATCTGAGACAGAG