Contig 007437:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037O11Sequence611007437 (2)gb|KJB73465.1|5e-26hypothetical protein B456_011G234000 [Gossypium raimondii]728008287 (2)ref|XP_009591901.1|1e-69PREDICTED: poly(rC)-binding protein 4-like, partial [Nicotiana tomentosiformis]
JMSF006J07Sequence325007437 (2)ref|XP_009760990.1|6e-34PREDICTED: RNA-binding protein Nova-1-like isoform X2 [Nicotiana sylvestris]107008287 (2)

Alignment

This contig is upended


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JMSF006J07+                                                               GTCTTCAA
                      ____________________________________________________________
consensus                                                                 GTCTTCAA
 
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JMSF006J07+           TGAATGTCTTTATGATGGCTCCTCCTTTCCCTATTATTCCACCACAAGAACCATTAGGCA
                      ____________________________________________________________
consensus             TGAATGTCTTTATGATGGCTCCTCCTTTCCCTATTATTCCACCACAAGAACCATTAGGCA
 
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JMSF006J07+           CAATTAATCTAAATTTGGATCGCGGCTCAGAATCACCACCGTCATCAACAAAAAACTCAT
JMFF037O11+                                                            AAAAAACTCAT
                      ____________________________________________________________
consensus             CAATTAATCTAAATTTGGATCGCGGCTCAGAATCACCACCGTCATCAACAAAAAACTCAT
 
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JMSF006J07+           CCAGTAATTTAGCAAGGATAAGATCAAGTGCCTTGAGTATGTCATCAACAGTTCCAGATA
JMFF037O11+           CCAGTAATTTAGCAAGGATAAGATCAAGTGCCTTGAGTATGTCATCAACAGTTCCAGATA
                      ____________________________________________________________
consensus             CCAGTAATTTAGCAAGGATAAGATCAAGTGCCTTGAGTATGTCATCAACAGTTCCAGATA
 
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JMSF006J07+           CCATAACAATCCTATCAGAGGTACCAGGGAAAAATTCATGATTGCGTGATAACTGAATTC
JMFF037O11+           CCATAACAATCCTATCAGAGGTACCAGGGAAAAATTCATGATTGCGTGATAACTGAATTC
                      ____________________________________________________________
consensus             CCATAACAATCCTATCAGAGGTACCAGGGAAAAATTCATGATTGCGTGATAACTGAATTC
 
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JMSF006J07+           TAGCCCCTGATCGTGATTGGAAATCATTAATTGTAGAGCCACCTTTTCCAATAATAGAAC
JMFF037O11+           TAGCCCCTGATCGTGATTGGAAATCATTAATTGTAGAGCCACCTTTTCCAATAATAGAAC
                      ____________________________________________________________
consensus             TAGCCCCTGATCGTGATTGGAAATCATTAATTGTAGAGCCACCTTTTCCAATAATAGAAC
 
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JMSF006J07+           CAGCTTCAGGATTTGAC                                           
JMFF037O11+           CAGCTTCAGGATTTGACAGAAGAAACTTCACATAAGTTGTCTTCTCTGTGTCTTCAGGTG
                      ____________________________________________________________
consensus             CAGCTTCAGGATTTGACAGAAGAAACTTCACATAAGTTGTCTTCTCTGTGTCTTCAGGTG
 
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JMFF037O11+           GCGGAGGCGGCGGCGGCGATGAATTGCGAGGGGAAGATTCATTGTTTTGCTCTTCGGCGG
                      ____________________________________________________________
consensus             GCGGAGGCGGCGGCGGCGATGAATTGCGAGGGGAAGATTCATTGTTTTGCTCTTCGGCGG
 
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JMFF037O11+           CAGACGAGTTCTGCTTCGATTCCGCACCTTCCATCGCCATTTTGGTGTATACGGCTAGGG
                      ____________________________________________________________
consensus             CAGACGAGTTCTGCTTCGATTCCGCACCTTCCATCGCCATTTTGGTGTATACGGCTAGGG
 
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JMFF037O11+           AAACCAGAGAGAAGATTGAGATGTGAGTGTGCGTGTGTAGAGAGAGATAGAAAGAGAGAG
                      ____________________________________________________________
consensus             AAACCAGAGAGAAGATTGAGATGTGAGTGTGCGTGTGTAGAGAGAGATAGAAAGAGAGAG
 
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JMFF037O11+           AGAAGTCAAAACATTGGGAATATAGAGAGAGGGATGAGGGAGGGGGGTATACGACTATAC
                      ____________________________________________________________
consensus             AGAAGTCAAAACATTGGGAATATAGAGAGAGGGATGAGGGAGGGGGGTATACGACTATAC
 
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JMFF037O11+           GTATAAGTGAGGTGTAAGTATGTGTGGAGATTTAGGAGGAGTTTAGTTGATAGAGCCGCG
                      ____________________________________________________________
consensus             GTATAAGTGAGGTGTAAGTATGTGTGGAGATTTAGGAGGAGTTTAGTTGATAGAGCCGCG
 
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JMFF037O11+           TGAATGGGAAGAAAATGGTGAGAGAGTGGAGGCGCATGTGCTGAGATGTGGAGGCTAGAC
                      ____________________________________________________________
consensus             TGAATGGGAAGAAAATGGTGAGAGAGTGGAGGCGCATGTGCTGAGATGTGGAGGCTAGAC