Contig 007433:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035O01Sequence613007433 (5)ref|XP_011085122.1|8e-71PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i703002636 (4)ref|XP_009785816.1|1e-64PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF025I08Sequence484007433 (5)ref|XP_011085122.1|4e-38PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i
JMSF031A16Sequence645007433 (5)ref|XP_011085122.1|5e-86PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i783002636 (4)ref|XP_009785816.1|7e-89PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF036I08Sequence632007433 (5)ref|XP_011085122.1|1e-86PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i777002636 (4)ref|XP_009785816.1|1e-84PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [
JMSF048A23Sequence618007433 (5)ref|XP_011085122.1|9e-81PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Sesamum i699002636 (4)ref|XP_009785816.1|2e-76PREDICTED: eukaryotic translation initiation factor 3 subunit B-like, partial [

Alignment

This contig is upended


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JMSF036I08+                                                 CTCCCTTGGAGTATATACTTTT
JMSF031A16+                                                 CTCCCTTGGAGTATATACTTTT
                      ____________________________________________________________
consensus                                                   CTCCCTTGGAGTATATACTTTT
 
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JMSF036I08+           GTTTCAGGAGGTGCCCACTCATCTGGAACCTTCATGAATTTCTCAATGTCATCAAACATG
JMSF048A23+                AGGAGGTGCCCACTCATCTGGAACCNTCATGAATTTCTCAATGTCATCAAACATG
JMSF031A16+           GTTTCAGGAGGTGCCCACTCATCTGGAACCTTCATGAATTTCTCAATGTCATCAAACATG
JMFF035O01+                                                          GTCATCAAACATG
                      ____________________________________________________________
consensus             GTTTCAGGAGGTGCCCACTCATCTGGAACCTTCATGAATTTCTCAATGTCATCAAACATG
 
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JMSF036I08+           TTGACGGCAAATATATGAGATTTGTCTAATCTGTATCCATGTGTTTTTTCCTTAGCAAGC
JMSF048A23+           TTGACGGCAAATATATGAGATTTGTCTAATCTGTATCCATGTGTTTTTTCCTTAGCAAGC
JMSF031A16+           TTGACGGCAAATATATGAGATTTGTCTAATCTGTATCCATGTGTTTTTTCCTTAGCAAGC
JMFF035O01+           TTGACGGCAAATATATGAGATTNGTCTAATCTGTATCCATGTGTTTTTTCCTTAGCAAGC
                      ____________________________________________________________
consensus             TTGACGGCAAATATATGAGATTTGTCTAATCTGTATCCATGTGTTTTTTCCTTAGCAAGC
 
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JMSF036I08+           TCAGCTTCCTGAGGAGTGTTGTACTCAATGAAGCAGTAGCCTAGGGTTTTCTGAGTATCG
JMSF048A23+           TCAGCTTCCTGAGGAGTGTTGTACTCAATGAAGCAGTAGCCTAGGGTTTTCTGAGTATCG
JMSF031A16+           TCAGCTTCCTGAGGAGTGTTGTACTCAATGAAGCAGTAGCCTAGGGTTTTCTGAGTATCG
JMSF025I08+                                                               GAGTATCG
JMFF035O01+           TCAGCTTCCTGAGGAGTGTTGTACTCAATGAAGCAGTAGCCTAGGGTTTTCTGAGTATCG
                      ____________________________________________________________
consensus             TCAGCTTCCTGAGGAGTGTTGTACTCAATGAAGCAGTAGCCTAGGGTTTTCTGAGTATCG
 
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JMSF036I08+           GGATCGACCGGCATCCATAGACCATCCTCCTTAATCACCCCAATTTGGCCGTATATTTTA
JMSF048A23+           GGATCGACCGGCATCCATAGACCATCCTCCTTAATCACCCCAATTTGGCCGTATATTTTA
JMSF031A16+           GGATCGACCGGCATCCATAGACCATCCTCCTTAATCACCCCAATTTGGCCGTATATTTTA
JMSF025I08+           GGATCGACCGGCATCCATAGACCATCCTCCTTAATCACCCCAATTTGGCCGTATATTTTA
JMFF035O01+           GGATCGACCGGCATCCATAGACCATCCTCCTTAATCACCCCAATTTGGCCGTATATTTTA
                      ____________________________________________________________
consensus             GGATCGACCGGCATCCATAGACCATCCTCCTTAATCACCCCAATTTGGCCGTATATTTTA
 
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JMSF036I08+           CGGACAACACCTTCCAGCTTCTCAAATTTTTCTTTTGGAACGACCGGCAAATTGTCCACC
JMSF048A23+           CGGACAACACCTTCCAGCTTCTCAAATTTTTCTTTTGGAACGACCGGCAAATTGTCCACC
JMSF031A16+           CGGACAACACCTTCCAGCTTCTCAAATTTTTCTTTTGGAACGACCGGCAAATTGTCCACC
JMSF025I08+           CGGACAACACCTTCCAGCTTCTCAAATTTTTCTTTTGGAACGACCGGCAAATTGTCCACC
JMFF035O01+           CGGACAACACCTTCCAGCTTCTCAAATTTTTCTTTTGGAACGACCGGCAAATTGTCCACC
                      ____________________________________________________________
consensus             CGGACAACACCTTCCAGCTTCTCAAATTTTTCTTTTGGAACGACCGGCAAATTGTCCACC
 
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JMSF036I08+           ACTATCACGCTCCCAAAACCGGTATCGAACTCCAATGCATCCTCTTCCTCTAAGTCGCCA
JMSF048A23+           ACTATCACGCTCCCAAAACCGGTATCGAACTCCAATGCATCCTCTTCCTCTAAGTCGCCA
JMSF031A16+           ACTATCACGCTCCCAAAACCGGTATCGAACTCCAATGCATCCTCTTCCTCTAAGTCGCCA
JMSF025I08+           ACTATCACGCTCCCAAAACCGGTATCGAACTCCAATGCATCCTNTTCCTGTAAGTCGCCA
JMFF035O01+           ACTATCACGCTCCCAAAACCGGTATCGAACTCCAATGCATCCTCTTCCTCTAAGTCGCCA
                      ____________________________________________________________
consensus             ACTATCACGCTCCCAAAACCGGTATCGAACTCCAATGCATCCTCTTCCTCTAAGTCGCCA
 
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JMSF036I08+           TCGTCACTTACGATGCCAAAGTCCTCGCCGGGAGGGAGACGAATGGAGTCCAGATCGATT
JMSF048A23+           TCGTCACTTACGATGCCAAAGTCCTCGCCGGGAGGGAGACGAATGGAGTCCAGATCGATT
JMSF031A16+           TCGTCACTTACGATGCCAAAGTCCTCGCCGGGAGGGAGACGAATGGAGTCCAGATCGATT
JMSF025I08+           TCGTCACNTANGATGCCAAAGTCCTCGCCGGGAGGGAGACGAATGGAGTCCAGATCGATT
JMFF035O01+           TCGTCACTTACGATGCCAAAGTCCTCGCCGGGAGGGAGACGAATGGAGTCCAGATCGATT
                      ____________________________________________________________
consensus             TCGTCACTTACGATGCCAAAGTCCTCGCCGGGAGGGAGACGAATGGAGTCCAGATCGATT
 
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JMSF036I08+           TCGGAAAGGTCAATATTGAGCCGAGCAGCCGTGGCTCGAATCTCCTCCATAGACATCGTT
JMSF048A23+           TCGGAAAGGTCAATATTGAGCCGAGCAGCCGTGGCTCGAATCTCCTCCATAGACATCGTT
JMSF031A16+           TCGGAAAGGTCAATATTGAGCCGAGCAGCCGTGGCTCGAATCTCCTCCATAGACATCGTT
JMSF025I08+           TCGGAAAGGTCAATATTGAGCNGAGCAGCCGTGGCTCGAATCTCCTCCATAGACATCGTT
JMFF035O01+           TCGGAAAGGTCAATATTGAGCCGAGCAGCCGTGGCTCGAATCTCCTCCATAGACATCGTT
                      ____________________________________________________________
consensus             TCGGAAAGGTCAATATTGAGCCGAGCAGCCGTGGCTCGAATCTCCTCCATAGACATCGTT
 
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JMSF036I08+           TCCGCCATTGTTGGACTCTCTTGCGAACGATTTTGACGCCTTCTTCTTCCTGTCGGTGTT
JMSF048A23+           TCCGCCATTGTTGGACTCTCTTGCGAACGATTTTGACGCCTTCTTCTTCCTGTCGGTGTT
JMSF031A16+           TCCGCCATTGTTGGACTCTCTTGCGAACGATTTTGACGCCTTCTTCTTCCTGTCGGTGTT
JMSF025I08+           TCCGCCATTGTTGGACTCTCTTGCGAACGATTTTGACGCCTTCTTCTTCCNGTCGGTGTT
JMFF035O01+           TCCGCCATTGTTGGACTCTCTTGCGAACGATTTTGACGCCTTCTTCTTCCTGTCGGTGTT
                      ____________________________________________________________
consensus             TCCGCCATTGTTGGACTCTCTTGCGAACGATTTTGACGCCTTCTTCTTCCTGTCGGTGTT
 
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JMSF036I08+           GAATGTCTGTATGAGATTGAATTGGTGAAAGAAAGCCAGTTTAAGCTCAGAGACGATGCC
JMSF048A23+           GAATGTCTGTATGAGATTGAATTGGTGAAAGAAAGCCAGTTTAAGCTCAGAGACGATGCC
JMSF031A16+           GAATGTCTGTATGAGATTGAATTGGTGAAAGAAAGCCAGTTTAAGCTCAGAGACGATGCC
JMSF025I08+           GAATGTCTGTATGAGATTGAANTGGTGAAAGAAAGCCAGTTTAAGCTCAGAGACGATGCC
JMFF035O01+           GAATGTCTGTATGAGATTGAATTGGTGAAAGAAAGCCAGTTTAAGCTCAGAGACGATGCC
                      ____________________________________________________________
consensus             GAATGTCTGTATGAGATTGAATTGGTGAAAGAAAGCCAGTTTAAGCTCAGAGACGATGCC
 
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JMSF036I08+           GCGAAGTGT                                                   
JMSF048A23+           GCGAAGTGTAAGAGCGCAGGAC                                      
JMSF031A16+           GCGAAGTGTAAGAGCGCAGGAC                                      
JMSF025I08+           GCGAAGTGTAAGAGCGCAGGACAAGAGAATACTAGGGTTTTTGTTATGGGATGAT     
JMFF035O01+           GCGAAGTGTAAGAGCGCAGGACAAGAGAATACTAGGGTTTTTGTTATGGGATGATATTCT
                      ____________________________________________________________
consensus             GCGAAGTGTAAGAGCGCAGGACAAGAGAATACTAGGGTTTTTGTTATGGGATGATATTCT