Contig 007417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032D06Sequence507007417 (3)511007417 (3)
JMFF032D18Sequence486007417 (3)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+                                                                  TCAT
rJMFF032D06+                                                                  TCAT
                      ____________________________________________________________
consensus                                                                     TCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          CGCTGTCTGGAACAGCGATGACTCGAGAA-CCGATTCATTCCCAAACCGAGCATTAGTAG
rJMFF032D06+          CGCTGTCTGGAACAGCGATGACTCGAGAACCCGATTCATTCCCAAACCGAGCATTAGTAG
JMFF032D06-                                            ATTCATTCCCAAACCGAGCATTAGTAG
                      ____________________________________________________________
consensus             CGCTGTCTGGAACAGCGATGACTCGAGAACCCGATTCATTCCCAAACCGAGCATTAGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          CCTTATAGCTACCCTTCATCTTNTAANCCATATTCCACTGTTCTCATTGTCTAAACAAGA
rJMFF032D06+          CCTTATAGCTACCCTTCATCTTCTAAACCATATTCCACTGTTCTCATTGTCTAAACAAGA
JMFF032D06-           CCTTATAGCTACCCTTCATCTTCTAAACCATATTCCACTGTTCTCATTGTCTAAACAAGA
                      ____________________________________________________________
consensus             CCTTATAGCTACCCTTCATCTTCTAAACCATATTCCACTGTTCTCATTGTCTAAACAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          GAAGGGAATGTCTACAGTTGTCAAGATTTCTTTTGGGGTGAGGTACAGAAATCAAAGCGA
rJMFF032D06+          GAAGGGAATGTCTACAGTTGTCAAGATTTCTTTTGGGGTGAGGTACAGAAATCAAAGCGA
JMFF032D06-           GAAGGGAATGTCTACAGTTGTCAAGATTTCTTTTGGGGTGAGGTACAGAAATCAAAGCGA
                      ____________________________________________________________
consensus             GAAGGGAATGTCTACAGTTGTCAAGATTTCTTTTGGGGTGAGGTACAGAAATCAAAGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          TGGAGATCACAATGATGATGGATACTATGGTTATCTGCCATCAGCATGGTTAGAGGTAGA
rJMFF032D06+          TGGAGATCACAATGATGATGGATACTATGGTTATCTGCCATCAGCATGGTTAGAGGTAGA
JMFF032D06-           TGGAGATCACAATGATGATGGATACTATGGTTATCTGCCATCAGCATGGTTAGAGGTAGA
                      ____________________________________________________________
consensus             TGGAGATCACAATGATGATGGATACTATGGTTATCTGCCATCAGCATGGTTAGAGGTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          TGGAGATTATGACTATGCTCCCGCAGCCTCATTAGAAGGTGATGATGACGACGATGGCTA
rJMFF032D06+          TGGAGATTATGACTATGCTCCCGCAGCCTCATTAGAAGGTGATGATGACGACGATGGCTA
JMFF032D06-           TGGAGATTATGACTATGCTCCCGCAGCCTCATTAGAAGGTGATGATGACGACGATGGCTA
                      ____________________________________________________________
consensus             TGGAGATTATGACTATGCTCCCGCAGCCTCATTAGAAGGTGATGATGACGACGATGGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          TGATTATGCTCCCGCTGCCTCCTTAGAAGGTGATGATGATGACGACAGCTATGATTATGC
rJMFF032D06+          TGATTATGCTCCCGCTGCCTCCTTAGAAGGTGATGATGATGACGACAGCTATGATTATGC
JMFF032D06-           TGATTATGCTCCCGCTGCCTCCTTAGAAGGTGATGATGATGACGACAGCTATGATTATGC
                      ____________________________________________________________
consensus             TGATTATGCTCCCGCTGCCTCCTTAGAAGGTGATGATGATGACGACAGCTATGATTATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          TCCAGCTGCATGAAATATTATATTAATGGCAATGACATGCTGCAATAATTCATNGTGTTT
rJMFF032D06+          TCCAGCTGCATGAAATATTATATTAATGGCAATGACATGCTGCAATAATTCATTGTGTTT
JMFF032D06-           TCCAGCTGCATGAAATATTATATTAATGGCAATGACATGCTGCAATAATTCATTGTGTTT
                      ____________________________________________________________
consensus             TCCAGCTGCATGAAATATTATATTAATGGCAATGACATGCTGCAATAATTCATTGTGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          AGGGAGTAGTAGTTTAGTGAGGGATAACATCAAAGACAGACTTGGCTACAAGCTCAAGAT
rJMFF032D06+          AGGGAGTAGTAGTTTAGTGAGGGATAACATCAAAGACAGACTTGGCTACAAGCTCAAGAT
JMFF032D06-           AGGGAGTAGTAGTTTAGTGAGGGATAACATCAAAGACAGACTTGGCTACNAGCTCAAGAT
                      ____________________________________________________________
consensus             AGGGAGTAGTAGTTTAGTGAGGGATAACATCAAAGACAGACTTGGCTACAAGCTCAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF032D18+          AAC                                                         
rJMFF032D06+          AACCAGTGAATTTTTTGGTTTAGTAAT                                 
JMFF032D06-           AACCAGTGAATTTTTTGGTTTAGTAATTGACTGCAAAAGGTTTTTCTATCAAAAAAAAAA
                      ____________________________________________________________
consensus             AACCAGTGAATTTTTTGGTTTAGTAATTGACTGCAAAAGGTTTTTCTATCAAAAAAAAAA