Contig 007416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008F18Sequence548007416 (5)ref|XP_009610396.1|2e-59PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment728002618 (4)gb|KDP46484.1|4e-49hypothetical protein JCGZ_08456 [Jatropha curcas]
JMFF031O21Sequence583007416 (5)ref|XP_009610396.1|2e-59PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment709002618 (4)gb|KDP46484.1|2e-48hypothetical protein JCGZ_08456 [Jatropha curcas]
JMFS109H07Sequence604007416 (5)ref|XP_009610396.1|8e-93PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment
JMSF013P04Sequence497007416 (5)ref|XP_009610396.1|6e-51PREDICTED: zinc finger CCCH domain-containing protein 66-like [Nicotiana toment668002618 (4)gb|KDP46484.1|1e-46hypothetical protein JCGZ_08456 [Jatropha curcas]
JMSF045O19Sequence623007416 (5)ref|XP_009795435.1|8e-63PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X2 [Nicot637002618 (4)ref|XP_007016084.1|1e-44Zinc finger family protein [Theobroma cacao] gb|EOY33703.1| Zinc finger family p

Alignment

This contig is upended


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JMFS109H07+                                                                   ACTC
                      ____________________________________________________________
consensus                                                                     ACTC
 
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JMFS109H07+           GGTCCAGTCATGAGAGTACGCCCGGGAACATGGCTTCACCTTAAACGTGTACATTCTGAA
                      ____________________________________________________________
consensus             GGTCCAGTCATGAGAGTACGCCCGGGAACATGGCTTCACCTTAAACGTGTACATTCTGAA
 
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JMFS109H07+           GTCATCAGTCCCATAAATACCATTCTTTATGTCTGGAAGGGAGGGATCAATGGGGTATTC
                      ____________________________________________________________
consensus             GTCATCAGTCCCATAAATACCATTCTTTATGTCTGGAAGGGAGGGATCAATGGGGTATTC
 
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JMFS109H07+           TTTCCTCTCACTCCCATCTTTCGAGACATTTGGATAGACCACCCGTTGCTCTTCAACCTT
                      ____________________________________________________________
consensus             TTTCCTCTCACTCCCATCTTTCGAGACATTTGGATAGACCACCCGTTGCTCTTCAACCTT
 
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JMFS109H07+           TTCAATCAACCCGTAGCCTTCATCAGTATCACCACCGCCCTTGAGAACATGCTCCATCAT
JMSF045O19+                                      ATCACCACCGCCNTTGAGAACATGNTCCATCAT
                      ____________________________________________________________
consensus             TTCAATCAACCCGTAGCCTTCATCAGTATCACCACCGCCCTTGAGAACATGCTCCATCAT
 
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JMFS109H07+           CTTCTTCTGCGAGGTGAATCTGCAGAAGGGGATCAAGTCAGCAGCCCGGTTTCCATTGGC
JMFF008F18+                            ATCTGCAGAAGGGGATCAAGTCAGCAGCCCGGTTTCCATTGGC
JMSF045O19+           CTTTTTATGCGAGGTGAATCTGCAGAAGGGGATCAAGTCAGCAGCCCGGTTTCCATTGGC
JMFF031O21+                            ATCTGCAGAAGGGGATCAAGTCAGCAGCCCGGTTTCCATTGGC
                      ____________________________________________________________
consensus             CTTTTTCTGCGAGGTGAATCTGCAGAAGGGGATCAAGTCAGCAGCCCGGTTTCCATTGGC
 
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JMFS109H07+           GTCCACCAAATTCTCATCAGCCGAGTAACCAAGCAAGAGCTTGATAACATCAAGCGAGGC
JMSF013P04+                                        CAAGCAAGAGCTTGATAACATCAAGCGAGGC
JMFF008F18+           GTCCACCAAATTCTCATCAGCCGAGTAACCAAGCAAGAGCTTGATAACATCAAGCGAGGC
JMSF045O19+           GTCCACCAAATTCTCATCAGCCGAGTAACCAAGCAAGAGCTTGATAACATCAAGCGAGGC
JMFF031O21+           GTCCACCAAATTCTCATCAGCCGAGTAACCAAGCAAGAGCTTGATAACATCAAGCGAGGC
                      ____________________________________________________________
consensus             GTCCACCAAATTCTCATCAGCCGAGTAACCAAGCAAGAGCTTGATAACATCAAGCGAGGC
 
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JMFS109H07+           AGTAGAGCCACCAGAAACCGCACAGTGGAGAGCAGTAGCCCCATCAGAGCCACAAGCTCG
JMSF013P04+           AGTAGAGCCACCAGAAACCGCACAGTGGAGAGCAGTAGCCCCATCAGAGCCACAAGCTCG
JMFF008F18+           AGTAGAGCCACCAGAAACCGCACAGTGGAGAGCAGTAGCCCCATCAGAGCCACAAGCTCG
JMSF045O19+           AGTAGAGCCACCAGAAACCGCACAGTGGAGAGCAGTAGCCCCATCAGAGCCACAAGCTCG
JMFF031O21+           AGTAGAGCCACCAGAAACCGCACAGTGGAGAGCAGTAGCCCCATCAGAGCCACAAGCTCG
                      ____________________________________________________________
consensus             AGTAGAGCCACCAGAAACCGCACAGTGGAGAGCAGTAGCCCCATCAGAGCCACAAGCTCG
 
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JMFS109H07+           GTTAATCTCACCACAACCGTTCTCCAGAATATAATTCAGCACCCGTTTGCTACCAAAAAT
JMSF013P04+           GTTAATCTCACCACAACCGTTCTCCAGAATATAATTCAGCACCCGTTTGCTACCAAAAAT
JMFF008F18+           GTTAATCTCACCACAACCGTTCTCCAGAATATAATTCAGCACCCGTTTGCTACCAAAAAT
JMSF045O19+           GTTAATCTCACCACAACCGTTCTCCAGAATATAATTCAGCACCCGTTTGCTACCAAAAAT
JMFF031O21+           GTTAATCTCACCACAACCGTTCTCCAGAATATAATTCAGCACCCGTTTGCTACCAAAAAT
                      ____________________________________________________________
consensus             GTTAATCTCACCACAACCGTTCTCCAGAATATAATTCAGCACCCGTTTGCTACCAAAAAT
 
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JMFS109H07+           TGAAGCAACCATAAGGGGTGTCCTCTCCTCATACCCCATCTTCTTAGAACCAATTCTTCT
JMSF013P04+           TGAAGCAACCATAAGGGGTGTCCTCTCCTCATACCCCATCTTCTTAGAACCAATTCTTCT
JMFF008F18+           TGAAGCAACCATAAGGGGTGTCCTCTCCTCATACCCCATCTTCTTAGAACCAATTCTTCT
JMSF045O19+           TGAAGCAACCATAAGGGGTGTCCTCTCCTCATACCCCATCTTCTTAGAACCAATTCTTCT
JMFF031O21+           TGAAGCAACCATAAGGGGTGTCCTCTCCTCATACCCCATCTTCTTAGAACCAATTCTTCT
                      ____________________________________________________________
consensus             TGAAGCAACCATAAGGGGTGTCCTCTCCTCATACCCCATCTTCTTAGAACCAATTCTTCT
 
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JMFS109H07+           CCCATACCACAATCCTGACATGTTCACATCAAGACCCTCTTCTTCAACAGCTGCTCTAAA
JMSF013P04+           CCCATACCACAATCCTGACATGTTCACATCAAGACCCTCTTCTTCAACAGCTGCTCTAAA
JMFF008F18+           CCCATACCACAATCCTGACATGTTCACATCAAGACCCTCTTCTTCAACAGCTGCTCTAAA
JMSF045O19+           CCCATACCACAATCCTGACATGTTCACATCAAGACCCTCTTCTTCAACAGCTGCTCTAAA
JMFF031O21+           CCCATACCACAATCCTGACATGTTCACATCAAGACCCTCTTCTTCAACAGCTGCTCTAAA
                      ____________________________________________________________
consensus             CCCATACCACAATCCTGACATGTTCACATCAAGACCCTCTTCTTCAACAGCTGCTCTAAA
 
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JMSF013P04+           CCCTCTAAGATCATCATTCGCGGATAACTCGAGCAAAATCTCTTGCCCTTGAATTCCACC
JMFF008F18+           CCCTCTAAGATCATCATTCGCGGATAACTCGAGCAAAATCTCTTGCCCTTGAATTCCACC
JMSF045O19+           CCCTCTAAGATCATCATTCGCGGATAACTCGAGCAAAATCTCTTGCCCTTGAATTCCACC
JMFF031O21+           CCCTCTAAGATCATCATTCGCGGATAACTCGAGCAAAATCTCTTGCCCTTGAATTCCACC
                      ____________________________________________________________
consensus             CCCTCTAAGATCATCATTCGCGGATAACTCGAGCAAAATCTCTTGCCCTTGAATTCCACC
 
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JMSF013P04+           TTCCATAGCTAGATCATCAGGAACAACTTTCCTCCTAGAGCCACTACACATCCTATCAAT
JMFF008F18+           TTCCATAGCTAGATCATCAGGAACAACTTTCCTCCTAGAGCCACTACACATCCTATCAAT
JMSF045O19+           TTCCATAGCTAGATCATCAGGAACAACTTTCCTCCTAGAGCCACTACACATCCTATCAAT
JMFF031O21+           TTCCATAGCTAGATCATCAGGAACAACTTTCCTCCTAGAGCCACTACACATCCTATCAAT
                      ____________________________________________________________
consensus             TTCCATAGCTAGATCATCAGGAACAACTTTCCTCCTAGAGCCACTACACATCCTATCAAT
 
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JMSF013P04+           CTCTCTCAAATTGGGCAGAGCAGAGAGAAAAGGGAAGAATATGAAACCCAGATTTCCCGC
JMFF008F18+           CTCTC                                                       
JMSF045O19+           CTCTCTCAAATTGGGCAGAGCAGAGAGAAAAGGGAAGAATATGAAACCCAGATTTCCCGC
JMFF031O21+           CTCTCTCAAATTGGGCAGAGCAGAGAGAAAAGGGAAGAATATGAAACCCAGATTTCCCGC
                      ____________________________________________________________
consensus             CTCTCTCAAATTGGGCAGAGCAGAGAGAAAAGGGAAGAATATGAAACCCAGATTTCCCGC
 
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JMSF013P04+           ACAGGAAAAAGGGGAGCTAAACTCCAAATTGCTTAGAATGGGT                 
JMSF045O19+           ACAGGAAAAAGGGGAGCTAAACTCCAAATTGCTTAGAATGGGT                 
JMFF031O21+           ACAGGAAAAAGGGGAGCTAAACTCCAAATTGCTCAGAATGGGTTCACGCAATTCCTCTCC
                      ____________________________________________________________
consensus             ACAGGAAAAAGGGGAGCTAAACTCCAAATTGCTTAGAATGGGTTCACGCAATTCCTCTCC