Contig 007404:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028P17Sequence559007404 (5)
JMFF038J15Sequence440007404 (5)164020227
JMFF044N06Sequence653007404 (5)556014915gb|AFX97755.1|2e-60f-box family protein, partial [Galium verum var. asiaticum]
JMFN042B23Sequence406007404 (5)ref|XP_009783834.1|1e-27PREDICTED: tubby-like F-box protein 8 [Nicotiana sylvestris]
JMSF007F21Sequence362007404 (5)765022448emb|CDO97502.1|2e-83unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN042B23+                                 TACACATGCCCCTCCAAGACCTGCAAACTGCAGCACAT
                      ____________________________________________________________
consensus                                   TACACATGCCCCTCCAAGACCTGCAAACTGCAGCACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042B23+           GCGACAACATGTTTACGAGAAGGCCATGTGCTCTCGCTCTCCTCCAACCTTCTGATAACA
                      ____________________________________________________________
consensus             GCGACAACATGTTTACGAGAAGGCCATGTGCTCTCGCTCTCCTCCAACCTTCTGATAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042B23+           TCAAAAAGTAGCTCCGGTGGGAGATTAGACCAACAGCTGTTCTGGATCACCGGGGAATGG
                      ____________________________________________________________
consensus             TCAAAAAGTAGCTCCGGTGGGAGATTAGACCAACAGCTGTTCTGGATCACCGGGGAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042B23+           TCACTTAAGTCATGGAATGAACCATGAGATCTTCCCCTGTGATGGCCGGACAGCCTAACG
                      ____________________________________________________________
consensus             TCACTTAAGTCATGGAATGAACCATGAGATCTTCCCCTGTGATGGCCGGACAGCCTAACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042B23+           TCAAAGCTGCGCCTTGAAAAGCTCCCGAAGCTATCTCTAACATCACGAACTATACTACGG
JMFF038J15+                             AAGCTCCCGAAGCTATCTGTAACATCACGAACTATACTACGG
JMFF044N06+                             AAGCTCCCGAAGCTATCTCTAACATCACGAACTATACTACGG
JMFF028P17+                                                    ATCACGAACTATACTACGG
                      ____________________________________________________________
consensus             TCAAAGCTGCGCCTTGAAAAGCTCCCGAAGCTATCTCTAACATCACGAACTATACTACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN042B23+           AACGACATTTAATCTCGAAAACGATGGAGAGAAAGCAAAACAACAGAGTAAATATCACTG
JMFF038J15+           AACGACATTTAATCTCGAAAACGATGGAGAGAAAGCAAAACAACAGAGTAAATATCACTG
JMSF007F21+                                              CAAANCAACAGAGTAAATATCACTG
JMFF044N06+           AACGACATTTAATCTCGAAAACGATGGAGAGAAAGCAAAACAACAGAGTAAATATCACTG
JMFF028P17+           AACGACATTTAATCTCGAAAACGATGGAGAGAAAGCAAAACAACAGAGTAAATATCACTG
                      ____________________________________________________________
consensus             AACGACATTTAATCTCGAAAACGATGGAGAGAAAGCAAAACAACAGAGTAAATATCACTG
 
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JMFN042B23+           CCCTTCAGCTCATTTTTTATGGTTAAGCCTTTTTCCGGTACATTAAAGCTCACTTGACAA
JMFF038J15+           CCCTTCAGCTCATTTTTTATGGTTAAGCCTTTTTCCGGTACATTAAAGCTCACTTGACAA
JMSF007F21+           CCCTTCAGCTCATTTTTTATGGTTAAGCCTTTTTCCGGTACATTAAAGCTCACTTGACAA
JMFF044N06+           CCCTTCAGCTCATTTTTTATGGTTAAGCCTTTTTTCGGTACATTAAAGCTCACTTGACAA
JMFF028P17+           CCCTTCAGCTCATTTTTTATGGTTAAGCCTTTTTCCGGTACATTAAAGCTCACTTGACAA
                      ____________________________________________________________
consensus             CCCTTCAGCTCATTTTTTATGGTTAAGCCTTTTTCCGGTACATTAAAGCTCACTTGACAA
 
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JMFN042B23+           ATGAATGT                                                    
JMFF038J15+           ATGAATGTGGCTGTCACTTCGATGAAGAAATGCAGCAAAGATGAAGACACCCAATAATTG
JMSF007F21+           ATGAATGTGGCTGTCACTTCGATGAAGAAATGCAGCAAAGATGAAGACACCCAATAATTG
JMFF044N06+           ATGAATGTGGCTGTCACTTCGATGAAGAAATGCAGCAAAGATGAAGACACCCAATAATTG
JMFF028P17+           ATGAATGTGGCTGTCACTTCGATGAAGAAATGCAGCAAAGATGAAGACACCCAATAATTG
                      ____________________________________________________________
consensus             ATGAATGTGGCTGTCACTTCGATGAAGAAATGCAGCAAAGATGAAGACACCCAATAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF038J15+           GAAGGCGAAAATTAAGAGAACTATGAAGCAGATCAGAGAAAGAAAAAACAATAAAAAATG
JMSF007F21+           GAAGGCGAAAATTAAGAGAACTATGAAGCAGATCAGAGAAAGAAAAAACAATAAAAAATG
JMFF044N06+           GAAGGCGAAAATTAAGAGAACTATGAAGCAGATCAGAGAAAGAAAAAACAATAAAAAATG
JMFF028P17+           GAAGGCGAAAATTAAGAGAACTATGAAGCAGATCAGAGAAAGAAAAAACAATAAAAAATG
                      ____________________________________________________________
consensus             GAAGGCGAAAATTAAGAGAACTATGAAGCAGATCAGAGAAAGAAAAAACAATAAAAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF038J15+           GGTCAGACCCAGAAATTGGGGCGCTGATATAAGTATGTCTTGAACTTTTCACCTAAAGCT
JMSF007F21+           GGTCAGACCCAGAAATTGGGGCGCTGATATAAGTATGTCTTGAACTTTTCACCTAAAGCT
JMFF044N06+           GGTCAGACCCAGAAATTGGGGCGCTGATATAAGTATGTCTTGAACTTTTCACCTAAAGCT
JMFF028P17+           GGTCAGACCCAGAAATTGGGGCGCTGATATAAGTATGTCTTGAACTTTTCACCTAAAGCT
                      ____________________________________________________________
consensus             GGTCAGACCCAGAAATTGGGGCGCTGATATAAGTATGTCTTGAACTTTTCACCTAAAGCT
 
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JMFF038J15+           TTAACTCCCTAACCCACTTTTTCTCTCACTCTGCTTTTCCTCTCACCCGGACCCCAACCT
JMSF007F21+           TTAACTCCCTAACCCACTTTTTCTCTCACTCTGCTTTTCCTCTCACCCGGACCCCAACCT
JMFF044N06+           TTAACTCCCTAACCCACTTTTTCTCTCACTCTGCTTTTCCTCTCACCCGGACCCCAACCT
JMFF028P17+           TTAACTCCCTAACCCACTTTTTCTCTCACTCTGCTTTTCCTCTCACCCGGACCCCAACCT
                      ____________________________________________________________
consensus             TTAACTCCCTAACCCACTTTTTCTCTCACTCTGCTTTTCCTCTCACCCGGACCCCAACCT
 
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JMFF038J15+           AACATTAAATCCAGTTCAAAGAACCAGGCGC                             
JMSF007F21+           AACATTAAATCCAGTTCAAAGAACCAGGCGC                             
JMFF044N06+           AACATTAAATCCAGTTCAAAGAACCAGGCGCAGACTGGGTAGGAGAAGATGGAAAAAGGA
JMFF028P17+           AACATTAAATCCAGTTCAAAGAACCAGGCGCAGACTGGGTAGGAGAAGATGGAAAAAGGA
                      ____________________________________________________________
consensus             AACATTAAATCCAGTTCAAAGAACCAGGCGCAGACTGGGTAGGAGAAGATGGAAAAAGGA
 
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JMFF044N06+           AGAAAATCTCTACGAATGCGTAGTGGTAGACTGGTAGTTCTTAGCAATAATTACAGTTAA
JMFF028P17+           AGAAAATCTCTACGAATGCGTAGTGGTAGACTGGTAGTTCTTAGCAATAATTACAGTTAA
                      ____________________________________________________________
consensus             AGAAAATCTCTACGAATGCGTAGTGGTAGACTGGTAGTTCTTAGCAATAATTACAGTTAA
 
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JMFF044N06+           TTATTGGCGAGAAGAGAAGTAAATTCAGTACCACTCCGTATTAGAAAGCACAGTGCTAT 
JMFF028P17+           TTATTGGCGAGAAGAGAAGTAAATTCAGTACCACTCCGTATTAGAAAGCACAGTGCTATT
                      ____________________________________________________________
consensus             TTATTGGCGAGAAGAGAAGTAAATTCAGTACCACTCCGTATTAGAAAGCACAGTGCTATT