clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF027O18 | Sequence | 527 | 007400 (4) | ref|XP_009796996.1| | 2e-32 | PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] ref|XP_009797003.1| PREDIC | 708 | 001502 (4) | ref|XP_009781390.1| | 5e-26 | PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] |
JMSF016G18 | Sequence | 489 | 007400 (4) | ref|XP_009796996.1| | 8e-38 | PREDICTED: TOM1-like protein 2 [Nicotiana sylvestris] ref|XP_009797003.1| PREDIC | 770 | 001502 (4) | emb|CDP11965.1| | 5e-23 | unnamed protein product [Coffea canephora] |
JMSF043D13 | Sequence | 732 | 007400 (4) | emb|CDP11965.1| | 9e-98 | unnamed protein product [Coffea canephora] | 783 | 001502 (4) | emb|CDP11965.1| | 2e-29 | unnamed protein product [Coffea canephora] |
JMSF051E18 | Sequence | 692 | 007400 (4) | emb|CDP11965.1| | 5e-86 | unnamed protein product [Coffea canephora] | 741 | 001502 (4) | ref|XP_011102017.1| | 6e-11 | PREDICTED: LOW QUALITY PROTEIN: ADP-ribosylation factor-binding protein GGA3 [S |
This contig is upended
. : . : . : . : . : . :
JMSF043D13+ CGGTGGAGTAA
____________________________________________________________
consensus CGGTGGAGTAA
. : . : . : . : . : . :
JMSF043D13+ ATAAAGGAACGCTGTTTTCTTCACGGGGAGGAAATTCCACACCAAAAGCCTTCAGCTCAT
JMSF051E18+ GGAAATTCCACACCAAAAGCCTTCAGCTCAT
____________________________________________________________
consensus ATAAAGGAACGCTGTTTTCTTCACGGGGAGGAAATTCCACACCAAAAGCCTTCAGCTCAT
. : . : . : . : . : . :
JMSF043D13+ TATAGGCAGCATGGTATTGTGGAAACCGTCCTCTGGGTCCCCCTAAAGCTTCTTGCCATG
JMSF051E18+ TATAGGCAGCATGGTATTGTGGAAACCGTCNTCTGGGTCCCCCTAAAGCTTCTTGCCATG
____________________________________________________________
consensus TATAGGCAGCATGGTATTGTGGAAACCGTCCTCTGGGTCCCCCTAAAGCTTCTTGCCATG
. : . : . : . : . : . :
JMSF043D13+ TATCTATCAGAATCAAAATCTTTTCCCTCACATTCAAATCAGGCTTTTTCTTTACAATTT
JMSF051E18+ TATCTATCAGAATCAAAATCTTTTCCCTCACATTCAAATCAGGCTTTTTCTTTACAATTT
____________________________________________________________
consensus TATCTATCAGAATCAAAATCTTTTCCCTCACATTCAAATCAGGCTTTTTCTTTACAATTT
. : . : . : . : . : . :
JMSF043D13+ TCACCATGTCATGCAAAATGTCCCGCTCAACAATCTGCTGAAATATATTCTCTCCACAGT
JMSF051E18+ TCACCATGTCATGCAAAATGTCCCGCTCAACAATCTGCTGAAATATATTCTCTCCACAGT
JMSF016G18+ CCACAGT
____________________________________________________________
consensus TCACCATGTCATGCAAAATGTCCCGCTCAACAATCTGCTGAAATATATTCTCTCCACAGT
. : . : . : . : . : . :
JMSF043D13+ TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
JMSF051E18+ TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
JMSF016G18+ TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
JMFF027O18+ CTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
____________________________________________________________
consensus TTTTGCTAAGAGTCTCAAGTACAAATAATGCAAGAAGTTGTATTTTAGGGTTTTTATTCC
. : . : . : . : . : . :
JMSF043D13+ CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
JMSF051E18+ CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
JMSF016G18+ CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
JMFF027O18+ CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTCCCCAGGGTTGATGTTAATAA
____________________________________________________________
consensus CAAGACGTTTCTTTAGAATCTTGAGTGCATCCTTCGCTTGCCCAGGGTTGATGTTAATAA
. : . : . : . : . : . :
JMSF043D13+ TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
JMSF051E18+ TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
JMSF016G18+ TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
JMFF027O18+ TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
____________________________________________________________
consensus TATCACAAAGCTCAATATTAACTGCCCAGTCAGGACCAATCAACATGTCACTTGTGGCCC
. : . : . : . : . : . :
JMSF043D13+ TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
JMSF051E18+ TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
JMSF016G18+ TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
JMFF027O18+ TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
____________________________________________________________
consensus TCTCAGCACAAGCCGCCGCATCGTTCGCCATATTTGTACAATCTCCCAAGTCCGTTAAAT
. : . : . : . : . : . :
JMSF043D13+ TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
JMSF051E18+ TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
JMSF016G18+ TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
JMFF027O18+ TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
____________________________________________________________
consensus TAACACTGCTTTGATCTCCTTAGTAAGACACCAAACACAAAAAAAAATCCACTAATTGAA
. : . : . : . : . : . :
JMSF043D13+ GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
JMSF051E18+ GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
JMSF016G18+ GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
JMFF027O18+ GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
____________________________________________________________
consensus GAATGCAACAAAGCAAGAACCGAGTATAAGTAGAGCTTCAAAGTCCAAAATCCACCAAGA
. : . : . : . : . : . :
JMSF043D13+ AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
JMSF051E18+ AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
JMSF016G18+ AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
JMFF027O18+ AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
____________________________________________________________
consensus AAAAATAGAAAGAACCCCAATCGCTAAAATCCTCAAAATCATGCTCTTCCCTCACAAAAA
. : . : . : . : . : . :
JMSF043D13+ TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAAC
JMSF051E18+ TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAAC
JMSF016G18+ TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAAC
JMFF027O18+ TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAACCCC
____________________________________________________________
consensus TAAAGAGATGAAAAATCCAGTACAGAGACGATCGAGATTGGAATCATCAGAGAAAACCCC
. : . : . : . : . : . :
JMFF027O18+ AAAAGGAGAAGGGCAGGATCTTTGACATTTATTACCTGAGCGAGAATGAATAATGGCACT
____________________________________________________________
consensus AAAAGGAGAAGGGCAGGATCTTTGACATTTATTACCTGAGCGAGAATGAATAATGGCACT