Contig 007396:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004M21Sequence533007396 (6)ref|XP_006342320.1|3e-72PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]714001045 (4)ref|XP_011075175.1|1e-32PREDICTED: TBCC domain-containing protein 1-like [Sesamum indicum]
JMFF008C09Sequence597007396 (6)ref|XP_006342320.1|9e-87PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]743001045 (4)ref|XP_011075175.1|5e-34PREDICTED: TBCC domain-containing protein 1-like [Sesamum indicum]
JMFF018C16Sequence592007396 (6)ref|XP_006342320.1|9e-86PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]742001045 (4)ref|XP_011075175.1|5e-35PREDICTED: TBCC domain-containing protein 1-like [Sesamum indicum]
JMFF027G06Sequence554007396 (6)ref|XP_006342320.1|1e-76PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]679007396 (6)ref|XP_006342320.1|2e-106PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]
JMSF003P16Sequence248007396 (6)ref|XP_006342320.1|4e-16PREDICTED: TBCC domain-containing protein 1-like isoform X1 [Solanum tuberosum]710001045 (4)ref|XP_011075175.1|1e-32PREDICTED: TBCC domain-containing protein 1-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF027G06- GTGATTCTTCTGCCTCTCCTTCAAC
                      ____________________________________________________________
consensus GTGATTCTTCTGCCTCTCCTTCAAC
 
. : . : . : . : . : . :
rJMFF027G06- TGAGTCAGCCAAAAGAGAGAGAATGTTGCCCACATGCTTCTGTAAATAGGATAACTGATG
                      ____________________________________________________________
consensus TGAGTCAGCCAAAAGAGAGAGAATGTTGCCCACATGCTTCTGTAAATAGGATAACTGATG
 
. : . : . : . : . : . :
rJMFF027G06- AGCCTCTTCATCAGATTGTGATGGCATGAACCTACGACTATTGCTGCGTACAAGTTGCAG
JMFF008C09+ TCATCAGATTGTGATGGCATGAACCTACGACTATTGCTGCGTACAAGTTGCAG
JMFF018C16+ TCATCAGATTGTGATGGCATGAACCTACGACTATTGCTGCGTACAAGTTGCAG
JMFF027G06+ CGTACAAGTTGCAG
                      ____________________________________________________________
consensus AGCCTCTTCATCAGATTGTGATGGCATGAACCTACGACTATTGCTGCGTACAAGTTGCAG
 
. : . : . : . : . : . :
rJMFF027G06- TGGCGAAAGGGCAGATAAGAACCCATCAAACGCAGAAGTGGACGGCCAAACATCGGCGAC
JMFF008C09+ TGGCGAAAGGGCAGATAAGAACCCATCAAACGCAGAAGTGGACGGCCAAACATCGGCGAC
JMFF004M21+ AAGGGCAGATAAGANCCCATCAAACGCAGAAGTGGACGGCCAAACATCGGCGAC
JMFF018C16+ TGGCGAAAGGGCAGATAAGAACCCATCAAACGCAGAAGTGGACGGCCAAACATCGGCGAC
JMFF027G06+ TGGCGAAAGGGCAGATAAGAACCCATCAAACGCAGAAGTGGACGGCCAAACATCGGCGAC
                      ____________________________________________________________
consensus TGGCGAAAGGGCAGATAAGAACCCATCAAACGCAGAAGTGGACGGCCAAACATCGGCGAC
 
. : . : . : . : . : . :
rJMFF027G06- TGCAGCGGAGTCCTTATGCCCCTTGGGAAGCAACCTCTTATAACTCTGAATGTACAGAAA
JMFF008C09+ TGCAGCGGAGTCCTTATGCCCCTTGGGAAGCAACCTCTTATAACTCTGAATGTACAGAAA
JMFF004M21+ TGCAGCGGAGTCCTTATGCCCCTTGGGAAGCAACCTCTTATAACTCTGAATGTACAGAAA
JMFF018C16+ TGCAGCGGAGTCCTTATGCCCCTTGGGAAGCAACCTCTTATAACTCTGAATGTACAGAAA
JMFF027G06+ TGCAGCGGAGTCCTTATGCCCCTTGGGAAGCAACCTCTTATAACTCTGAATGTACAGAAA
                      ____________________________________________________________
consensus TGCAGCGGAGTCCTTATGCCCCTTGGGAAGCAACCTCTTATAACTCTGAATGTACAGAAA
 
. : . : . : . : . : . :
rJMFF027G06- CACCACCAAATCGAACACATTCACGCCGACGGAATCAACCTCGGCGGGATTGGCAGAGAC
JMFF008C09+ CACCACCAAATCGAACACATTCACGCCGACGGAATCAACCTCGGCGGGATTGGCAGAGAC
JMFF004M21+ CACCACCAAATCGAACACATTCACGCCGACGGAATCAACCTCGGCGGGATTGGCAGAGAC
JMFF018C16+ CACCACCAAATCGAACACATTCACGCCGACGGAATCAACCTCGGCGGGATTGGCAGAGAC
JMFF027G06+ CACCACCAAATCGAACACATTCACGCCGACGGAATCAACCTCGGCGGGATTGGCAGAGAC
                      ____________________________________________________________
consensus CACCACCAAATCGAACACATTCACGCCGACGGAATCAACCTCGGCGGGATTGGCAGAGAC
 
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rJMFF027G06- GAGGGGATCCGATTCGTTGTGCAGAACGGCGGCAACAGTTTCGAGCACAAGGCGCGCGTG
JMFF008C09+ GAGGGGATCCGATTCGTTGTGCAGAACGGCGGCAACAGTTTCGAGCACAAGGCGCGCGTG
JMFF004M21+ GAGGGGATCCGATTCGTTGTGCAGAACGGCGGCAACAGTTTCGAGCACAAGGCGCGCGTG
JMFF018C16+ GAGGGGATCCGATTCGTTGTGCAGAACGGCGGCAACAGTTTCGAGCACAAGGCGCGCGTG
JMFF027G06+ GAGGGGATCCGATTCGTTGTGCAGAACGGCGGCAACAGTTTCGAGCACAAGGCGCGCGTG
                      ____________________________________________________________
consensus GAGGGGATCCGATTCGTTGTGCAGAACGGCGGCAACAGTTTCGAGCACAAGGCGCGCGTG
 
. : . : . : . : . : . :
rJMFF027G06- GTCAGGTGAGATCTGAAGCGTCTCCGAAACGGATTTCGAGTTGACACGGTGAGCAGAGTC
JMFF008C09+ GTCAGGTGAGATCTGAAGCGTCTCCGAAACGGATTTCGAGTTGACACGGTGAGCAGAGTC
JMFF004M21+ GTCAGGTGAGATCTGAAGCGTCTCCGAAACGGATTTCGAGTTGACACGGTGAGCAGAGTC
JMSF003P16+ TGAGCAGAGTC
JMFF018C16+ GTCAGGTGAGATCTGAAGCGTCTCCGAAACGGATTTCGAGTTGACACGGTGAGCAGAGTC
JMFF027G06+ GTCAGGTGAGATCTGAAGCGTCTCCGAAACGGATTTCGAGTTGACACGGTGAGCAGAGTC
                      ____________________________________________________________
consensus GTCAGGTGAGATCTGAAGCGTCTCCGAAACGGATTTCGAGTTGACACGGTGAGCAGAGTC
 
. : . : . : . : . : . :
rJMFF027G06- GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
JMFF008C09+ GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
JMFF004M21+ GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
JMSF003P16+ GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
JMFF018C16+ GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
JMFF027G06+ GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
                      ____________________________________________________________
consensus GGCAGAGAGCGACAAGAGCTTGTCCTTGATCGGGCCTAGGGTTTGCGTGCCGTCGGTGAA
 
. : . : . : . : . : . :
rJMFF027G06- TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
JMFF008C09+ TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
JMFF004M21+ TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
JMSF003P16+ TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
JMFF018C16+ TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
JMFF027G06+ TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
                      ____________________________________________________________
consensus TATGAGCTTCGTAATTTGGAGAAGGCCGTGCTCGAACGGCTCTCGCCGCGGATGGATATA
 
. : . : . : . : . : . :
rJMFF027G06- AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
JMFF008C09+ AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
JMFF004M21+ AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
JMSF003P16+ AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
JMFF018C16+ AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
JMFF027G06+ AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
                      ____________________________________________________________
consensus AATTGGCTCTGCGGTTCCGGCGGCGTACGGCGTCGACGGTGACGGTGACGGTGACGGTGG
 
. : . : . : . : . : . :
rJMFF027G06- TTCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCA
JMFF008C09+ TTCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCAGAG
JMFF004M21+ TTCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCAGAG
JMSF003P16+ TCCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCAGAG
JMFF018C16+ TTCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCAGAG
JMFF027G06+ TTCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCAGAGCAGAG
                      ____________________________________________________________
consensus TTCGGTAGCGTTCTCCATGGCTTCCTTGTAAATGTAGTGATCAAATCTTTCAGAGCAGAG