Contig 007392:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026H17Sequence519007392 (5)ref|XP_009777394.1|2e-61PREDICTED: putative clathrin assembly protein At2g01600 [Nicotiana sylvestris]704006936 (7)ref|XP_006355077.1|1e-52PREDICTED: putative clathrin assembly protein At2g01600-like [Solanum tuberosum
JMFF043F23Sequence634007392 (5)ref|XP_006355077.1|2e-114PREDICTED: putative clathrin assembly protein At2g01600-like [Solanum tuberosum588006936 (7)ref|XP_006355077.1|3e-37PREDICTED: putative clathrin assembly protein At2g01600-like [Solanum tuberosum
JMSF018O22Sequence302007392 (5)gb|EPS74138.1|3e-45hypothetical protein M569_00617, partial [Genlisea aurea]764006936 (7)ref|XP_006355077.1|3e-71PREDICTED: putative clathrin assembly protein At2g01600-like [Solanum tuberosum
JMSF023O22Sequence689007392 (5)ref|XP_009777394.1|6e-126PREDICTED: putative clathrin assembly protein At2g01600 [Nicotiana sylvestris]768006936 (7)ref|XP_006355077.1|2e-57PREDICTED: putative clathrin assembly protein At2g01600-like [Solanum tuberosum
JMSF041C06Sequence789007392 (5)ref|XP_009627948.1|2e-166PREDICTED: putative clathrin assembly protein At2g01600 [Nicotiana tomentosifor747006936 (7)ref|XP_006355077.1|7e-55PREDICTED: putative clathrin assembly protein At2g01600-like [Solanum tuberosum

Alignment

This contig is upended


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JMSF041C06+                                                        TCGTGGCATCTCGAA
                      ____________________________________________________________
consensus                                                          TCGTGGCATCTCGAA
 
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JMSF041C06+           AAACTTGTCAACAAGATTAATTATTCCGTCATTGATAGCACAGTAAATTTTAAAGCTCTC
                      ____________________________________________________________
consensus             AAACTTGTCAACAAGATTAATTATTCCGTCATTGATAGCACAGTAAATTTTAAAGCTCTC
 
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JMSF041C06+           CTTGAGGACCAGGGCTAGTGCATACTGTATCACATAATTTCCAACAGCAGCTCCTTCAGG
                      ____________________________________________________________
consensus             CTTGAGGACCAGGGCTAGTGCATACTGTATCACATAATTTCCAACAGCAGCTCCTTCAGG
 
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JMSF041C06+           CCGGCATCCAATAAGGCGATAGAGCAACTGCTGCAAAGCTGGCAACTGGTCCAGAAGCTC
JMSF023O22+                            GATAGAGCAACTGCTGCAAAGCTGGCAACTGGTCCAGAAGCTC
                      ____________________________________________________________
consensus             CCGGCATCCAATAAGGCGATAGAGCAACTGCTGCAAAGCTGGCAACTGGTCCAGAAGCTC
 
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JMSF041C06+           TTCACTGTTCAATTCTCTAGTTTTGCTGTAGCCCTTTTCTTGCCCCTGGGCAGGAGGTTT
JMSF023O22+           TTCACTGTTCAATTCTCTAGTTTTGCTGTAGCCCTTTTCTNGCCCCTGGGCAGGAGGTTT
JMFF043F23+                                                                     TT
                      ____________________________________________________________
consensus             TTCACTGTTCAATTCTCTAGTTTTGCTGTAGCCCTTTTCTTGCCCCTGGGCAGGAGGTTT
 
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JMSF041C06+           AGGAAGCCGCTCAGCTTCAATGTCATACTTGAGAACCCTAAAACACTCAAGCCGTTCTTC
JMSF023O22+           AGGAAGCCGCTCAGCTTCAATGTCATACTTGAGAACCCTAAAACACTCAAGCCGTTCTTC
JMFF043F23+           AGGAAGCCGCTCAGCTTCAATGTCATACTTGAGAACCCTAAAACACTCAAGCCGTTCTTC
                      ____________________________________________________________
consensus             AGGAAGCCGCTCAGCTTCAATGTCATACTTGAGAACCCTAAAACACTCAAGCCGTTCTTC
 
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JMSF041C06+           CAAAAAGAGTGCATATGTGCGTACCCATGCAGAGCAATCCCAAGCAATAGGGCTTGAATC
JMSF023O22+           CAAAAAGAGTGCATATGTGCGTACCCATGCAGAGCAATCCCAAGCAATAGGGCTTGAATC
JMFF043F23+           CAAAAAGAGTGCATATGTGCGTACCCATGCAGAGCAATCCCAAGCAATAGGGCTTGAATC
                      ____________________________________________________________
consensus             CAAAAAGAGTGCATATGTGCGTACCCATGCAGAGCAATCCCAAGCAATAGGGCTTGAATC
 
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JMSF041C06+           ATCCTTGAAATTGGACATTTGAAGAACACGACCTCTTTGCTGGAAATTCAGAAGTTCCTC
JMSF023O22+           ATCCTTGAAATTGGACATTTGAAGAACACGACCTCTTTGCTGGAAATTCAGAAGTTCCTC
JMFF043F23+           ATCCTTGAAATTGGACATTTGAAGAACACGACCTCTTTGCTGGAAATTCAGAAGTTCCTC
                      ____________________________________________________________
consensus             ATCCTTGAAATTGGACATTTGAAGAACACGACCTCTTTGCTGGAAATTCAGAAGTTCCTC
 
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JMSF041C06+           ACGAAATGTGGGATCACCTTCCCTCAATGTTCTATGGATTACTATGAGTGTTTTCAGTGC
JMSF023O22+           ACGAAATGTGGGATCACCTTCCCTCAATGTTCTATGGATTACTATGAGTGTTTTCAGTGC
JMFF043F23+           ACGAAATGTGGGATCACCTTCCCTCAATGTTCTATGGATTACTATGAGTGTTTTCAGTGC
JMFF026H17+                                  TCAATGTTCTATGGATTACTATGAGTGTTTTCAGTGC
                      ____________________________________________________________
consensus             ACGAAATGTGGGATCACCTTCCCTCAATGTTCTATGGATTACTATGAGTGTTTTCAGTGC
 
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JMSF041C06+           CACCGTCCAGTTGTGTGTCTTTGCTAATCTCCGAGCAAGTGCATGAATGCAGTATGCAAC
JMSF023O22+           CACCGTCCAGTTGTGTGTCTTTGCTAATCTCCGAGCAAGTGCATGAATGCAGTATGCAAC
JMSF018O22+                                       CTCCGAGCAAGTGCATGAATGCAGTATGCAAC
JMFF043F23+           CACCGTCCAGTTGTGTGTCTTTGCTAATCTCCGAGCAAGTGCATGAATGCAGTATGCAAC
JMFF026H17+           CACCGTCCAGTTGTGTGTCTTTGCTAATCTCCGAGCAAGTGCATGAATGCAGTATGCAAC
                      ____________________________________________________________
consensus             CACCGTCCAGTTGTGTGTCTTTGCTAATCTCCGAGCAAGTGCATGAATGCAGTATGCAAC
 
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JMSF041C06+           ATCAGCCCTAGGCCGCACTGCAGATGTATAAACCATAATTTTTCTGAGATGTCGCTCTTT
JMSF023O22+           ATCAGCCCTAGGCCGCACTGCAGATGTATAAACCATAATTTTTCTGAGATGTCGCTCTTT
JMSF018O22+           ATCAGCCCTAGGCCGCACTGCAGATGTATAAACCATAATTTTTCTGAGATGTCGCTCTTT
JMFF043F23+           ATCAGCCCTAGGCCGCACTGCAGATGTATAAACCATAATTTTTCTGAGATGTCGCTCTTT
JMFF026H17+           ATCAGCCCTAGGCCGCACTGCAGATGTATAAACCATAATTTTTCTGAGATGTCGCTCTTT
                      ____________________________________________________________
consensus             ATCAGCCCTAGGCCGCACTGCAGATGTATAAACCATAATTTTTCTGAGATGTCGCTCTTT
 
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JMSF041C06+           GGGTGGGCACTCAACATGATTAGTAGCCTTAACGATCGCCACATCGACATCCTTGAAATC
JMSF023O22+           GGGTGGGCACTCAACATGATTAGTAGCCTTAACGATCGCCACATCGACATCCTTGAAATC
JMSF018O22+           GGGTGGGCACTCAACATGATTAGTAGCCTTAACGATCGCCACATCGACATCCTTGAAATC
JMFF043F23+           GGGTGGGCACTCAACATGATTAGTAGCCTTAACGATCGCCACATCGACATCCTTGAAATC
JMFF026H17+           GGGTGGGCACTCAACATGATTAGTAGCCTTAACGATCGCCACATCGACATCCTTGAAATC
                      ____________________________________________________________
consensus             GGGTGGGCACTCAACATGATTAGTAGCCTTAACGATCGCCACATCGACATCCTTGAAATC
 
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JMSF041C06+           GCTATTGACATGGGCGAGGCCGACTTTGGTGTGATCTTTGAGCGCCCCGTAAGCTTTCCT
JMSF023O22+           GCTATTGACATGGGCGAGGCCGACTTTGGTGTGATCTTTGAGCGCCCCGTAAGCTTTCCT
JMSF018O22+           GCTATTGACATGGGCGAGGCCGACTTTGGTGTGATCTTTGAGCGCCCCGTAAGCTTTCCT
JMFF043F23+           GCTATTGACATGGGCGAGGCCGACTTTGGTGTGATCTTTGAGCGCCCCGTAAGCTTTCCT
JMFF026H17+           GCTATTGACATGGGCGAGGCCGACTTTGGTGTGATCTTTGAGCGCCCCGTAAGCTTTCCT
                      ____________________________________________________________
consensus             GCTATTGACATGGGCGAGGCCGACTTTGGTGTGATCTTTGAGCGCCCCGTAAGCTTTCCT
 
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JMSF041C06+           CCATGTTTGTAGCGTACCCATCTCTCTCTCTACACCGTTGGCTCCCGATCCCTC      
JMSF023O22+           CCATGTTTGTAGCGTACCCATCTCTCTCTCTACACCGTTGGCTCCCGATCCCTCTGTGAT
JMSF018O22+           CCATGTTTGTAGCGTACCCATCTCTCTCTCTACACCGTTGGCTCCCGATCCCTCTGTGAT
JMFF043F23+           CCATGTTTGTAGCGTACCCATCTCTCTCTCTACACCGTTGGCTCCCGATCCCTCTGTGAT
JMFF026H17+           CCATGTTTGTAGCGTACCCATCTCTCTCTCTACACCGTTGGCTCCCGATCCCTCTGTGAT
                      ____________________________________________________________
consensus             CCATGTTTGTAGCGTACCCATCTCTCTCTCTACACCGTTGGCTCCCGATCCCTCTGTGAT
 
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JMSF023O22+           CTCTCTCTCTAGAAGATTTCTTGAGGCCTGGAATTTTTCTCCAGT               
JMSF018O22+           CTCTCTCTCTAGAAGATTTCTTGAGGCCT                               
JMFF043F23+           CTCTCTCTCTAGAAGATTTCTTGAGGCCTGGAATTTTTCTCCAGTGAGGACAAGAGAGAG
JMFF026H17+           CTCTCTCTCTAGAAGATTTCTTGAGGCCTGGAATTTTTCTCCAGTGAGGACAAGAGAGAG
                      ____________________________________________________________
consensus             CTCTCTCTCTAGAAGATTTCTTGAGGCCTGGAATTTTTCTCCAGTGAGGACAAGAGAGAG
 
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JMFF043F23+           AAGCAAACAACTTTTTGGGGC                                       
JMFF026H17+           AAGCAAACAACTTTTTGGGGCAAAATTCTTTCAATCAGTTGGACCGGGGTGGCTTTTGGC
                      ____________________________________________________________
consensus             AAGCAAACAACTTTTTGGGGCAAAATTCTTTCAATCAGTTGGACCGGGGTGGCTTTTGGC
 
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JMFF026H17+           GGCCCCTCCAATTGGGTGTCTCATCATTTTGCTTATTCATTCAATTCAATGAAATGGAAT
                      ____________________________________________________________
consensus             GGCCCCTCCAATTGGGTGTCTCATCATTTTGCTTATTCATTCAATTCAATGAAATGGAAT