Contig 007389:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B09Sequence459007389 (5)ref|XP_009797863.1|3e-20PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]362008463 (10)
JMFF026D03Sequence532007389 (5)ref|XP_009797863.1|1e-17PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]588008463 (10)ref|XP_009620291.1|2e-30PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis]
JMFF035F17Sequence541007389 (5)ref|XP_009797863.1|7e-35PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]654008463 (10)ref|XP_009620291.1|3e-30PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis]
JMSF008G08Sequence424007389 (5)667008463 (10)emb|CDP02232.1|8e-26unnamed protein product [Coffea canephora]
JMSF043C07Sequence792007389 (5)ref|XP_009797863.1|1e-40PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris]631008463 (10)emb|CDP02232.1|3e-21unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF043C07+ GACCGGATAAGCCGGTGNTAA
                      ____________________________________________________________
consensus GACCGGATAAGCCGGTGNTAA
 
. : . : . : . : . : . :
JMSF043C07+ GCGCGAGGAGCATTTGCGGCGCTGAGGGGTAGTACGAGGAAGAGATCGGCGGCGGAGATG
                      ____________________________________________________________
consensus GCGCGAGGAGCATTTGCGGCGCTGAGGGGTAGTACGAGGAAGAGATCGGCGGCGGAGATG
 
. : . : . : . : . : . :
JMSF043C07+ GGGAATTCGGGCTGCTGTGGTCGTGAGGCGGCGGCGGCGGCGGTGGAGGCGGGTGGTGGC
                      ____________________________________________________________
consensus GGGAATTCGGGCTGCTGTGGTCGTGAGGCGGCGGCGGCGGCGGTGGAGGCGGGTGGTGGC
 
. : . : . : . : . : . :
JMFF035F17+ CG
JMSF043C07+ GGTGGTGGGGCTGGTACTCTAGAGCTGGCGCCGCGCTTGGCAGCCCAAGCGGCTCCTCCG
                      ____________________________________________________________
consensus GGTGGTGGGGCTGGTACTCTAGAGCTGGCGCCGCGCTTGGCAGCCCAAGCGGCTCCTCCG
 
. : . : . : . : . : . :
JMFF035F17+ GCTCACGGCGGTGGAAATTCCGGTGACACCCACACGCGGCACATTTCAGCGAGGTTGGGT
JMFF013B09+ GGGT
JMSF043C07+ GCTCACGGCGGTGGAAATTCCGGTGACACCCACACGCGGCACATTTCAGCGAGGTTGGGT
                      ____________________________________________________________
consensus GCTCACGGCGGTGGAAATTCCGGTGACACCCACACGCGGCACATTTCAGCGAGGTTGGGT
 
. : . : . : . : . : . :
JMFF035F17+ CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
JMFF013B09+ CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
JMSF043C07+ CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
JMFF026D03+ TTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
                      ____________________________________________________________
consensus CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
 
. : . : . : . : . : . :
JMFF035F17+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
JMFF013B09+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
JMSF043C07+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
JMSF008G08+ ACCGCGTGGTGGT
JMFF026D03+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
                      ____________________________________________________________
consensus CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
 
. : . : . : . : . : . :
JMFF035F17+ GGTGGTGGTGGTGGTGGAGCGAATTGNGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
JMFF013B09+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGNTAAAAGACA
JMSF043C07+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
JMSF008G08+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
JMFF026D03+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
                      ____________________________________________________________
consensus GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
 
. : . : . : . : . : . :
JMFF035F17+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
JMFF013B09+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCNTGAACATCACCGCCTT
JMSF043C07+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
JMSF008G08+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
JMFF026D03+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
                      ____________________________________________________________
consensus ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
 
. : . : . : . : . : . :
JMFF035F17+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMFF013B09+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMSF043C07+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMSF008G08+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMFF026D03+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
                      ____________________________________________________________
consensus TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
 
. : . : . : . : . : . :
JMFF035F17+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
JMFF013B09+ CCATGCTNTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
JMSF043C07+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACC
JMSF008G08+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
JMFF026D03+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
                      ____________________________________________________________
consensus CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
 
. : . : . : . : . : . :
JMFF035F17+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMFF013B09+ CTACTCTCCNGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMSF043C07+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMSF008G08+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMFF026D03+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
                      ____________________________________________________________
consensus CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
 
. : . : . : . : . : . :
JMFF035F17+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTT
JMFF013B09+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAG
JMSF043C07+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
JMSF008G08+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
JMFF026D03+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
                      ____________________________________________________________
consensus TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
 
. : . : . : . : . : . :
JMSF043C07+ GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGT
JMSF008G08+ GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGT
JMFF026D03+ GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGTAGAGATGAAG
                      ____________________________________________________________
consensus GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGTAGAGATGAAG