| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF013B09 | Sequence | 459 | 007389 (5) | ref|XP_009797863.1| | 3e-20 | PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris] | 362 | 008463 (10) | |||
| JMFF026D03 | Sequence | 532 | 007389 (5) | ref|XP_009797863.1| | 1e-17 | PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris] | 588 | 008463 (10) | ref|XP_009620291.1| | 2e-30 | PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis] |
| JMFF035F17 | Sequence | 541 | 007389 (5) | ref|XP_009797863.1| | 7e-35 | PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris] | 654 | 008463 (10) | ref|XP_009620291.1| | 3e-30 | PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana tomentosiformis] |
| JMSF008G08 | Sequence | 424 | 007389 (5) | 667 | 008463 (10) | emb|CDP02232.1| | 8e-26 | unnamed protein product [Coffea canephora] | |||
| JMSF043C07 | Sequence | 792 | 007389 (5) | ref|XP_009797863.1| | 1e-40 | PREDICTED: zinc-finger homeodomain protein 9-like [Nicotiana sylvestris] | 631 | 008463 (10) | emb|CDP02232.1| | 3e-21 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF043C07+ GACCGGATAAGCCGGTGNTAA
____________________________________________________________
consensus GACCGGATAAGCCGGTGNTAA
. : . : . : . : . : . :
JMSF043C07+ GCGCGAGGAGCATTTGCGGCGCTGAGGGGTAGTACGAGGAAGAGATCGGCGGCGGAGATG
____________________________________________________________
consensus GCGCGAGGAGCATTTGCGGCGCTGAGGGGTAGTACGAGGAAGAGATCGGCGGCGGAGATG
. : . : . : . : . : . :
JMSF043C07+ GGGAATTCGGGCTGCTGTGGTCGTGAGGCGGCGGCGGCGGCGGTGGAGGCGGGTGGTGGC
____________________________________________________________
consensus GGGAATTCGGGCTGCTGTGGTCGTGAGGCGGCGGCGGCGGCGGTGGAGGCGGGTGGTGGC
. : . : . : . : . : . :
JMFF035F17+ CG
JMSF043C07+ GGTGGTGGGGCTGGTACTCTAGAGCTGGCGCCGCGCTTGGCAGCCCAAGCGGCTCCTCCG
____________________________________________________________
consensus GGTGGTGGGGCTGGTACTCTAGAGCTGGCGCCGCGCTTGGCAGCCCAAGCGGCTCCTCCG
. : . : . : . : . : . :
JMFF035F17+ GCTCACGGCGGTGGAAATTCCGGTGACACCCACACGCGGCACATTTCAGCGAGGTTGGGT
JMFF013B09+ GGGT
JMSF043C07+ GCTCACGGCGGTGGAAATTCCGGTGACACCCACACGCGGCACATTTCAGCGAGGTTGGGT
____________________________________________________________
consensus GCTCACGGCGGTGGAAATTCCGGTGACACCCACACGCGGCACATTTCAGCGAGGTTGGGT
. : . : . : . : . : . :
JMFF035F17+ CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
JMFF013B09+ CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
JMSF043C07+ CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
JMFF026D03+ TTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
____________________________________________________________
consensus CCGCAGGATTCGCCGTTGGCGACGGCATGAACTCCCCGCAACCGTCCACGGCGTGGCCGC
. : . : . : . : . : . :
JMFF035F17+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
JMFF013B09+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
JMSF043C07+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
JMSF008G08+ ACCGCGTGGTGGT
JMFF026D03+ CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
____________________________________________________________
consensus CGATACTGGCGGCGTGGTTCTTCAGGCACTCCTTGTAAACAACCACCACCGCGTGGTGGT
. : . : . : . : . : . :
JMFF035F17+ GGTGGTGGTGGTGGTGGAGCGAATTGNGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
JMFF013B09+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGNTAAAAGACA
JMSF043C07+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
JMSF008G08+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
JMFF026D03+ GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
____________________________________________________________
consensus GGTGGTGGTGGTGGTGGAGCGAATTGTGGCGCTTCAGCACCCCGTTACTGCTAAAAGACA
. : . : . : . : . : . :
JMFF035F17+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
JMFF013B09+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCNTGAACATCACCGCCTT
JMSF043C07+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
JMSF008G08+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
JMFF026D03+ ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
____________________________________________________________
consensus ACGGCTTCACCGCCGAGATCCTCGCCGCCGGCGTCTCACTCTCCTGAACATCACCGCCTT
. : . : . : . : . : . :
JMFF035F17+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMFF013B09+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMSF043C07+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMSF008G08+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
JMFF026D03+ TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
____________________________________________________________
consensus TAACCGCCGCGGCCGCGGCGGAGCTCGCGTTGGTGGCTGCCGGAGGATTACTGCCTAAAT
. : . : . : . : . : . :
JMFF035F17+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
JMFF013B09+ CCATGCTNTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
JMSF043C07+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACC
JMSF008G08+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
JMFF026D03+ CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
____________________________________________________________
consensus CCATGCTCTAAACATCAAGCAGTAGTGGCCCTCTAAACTTCCCTCTTCCTTCTTCTCACT
. : . : . : . : . : . :
JMFF035F17+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMFF013B09+ CTACTCTCCNGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMSF043C07+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMSF008G08+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
JMFF026D03+ CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
____________________________________________________________
consensus CTACTCTCCTGTAACCTTAGATTAGGGTTAACCTTTCACGCCCAGAAACACCCATCTTTC
. : . : . : . : . : . :
JMFF035F17+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTT
JMFF013B09+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAG
JMSF043C07+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
JMSF008G08+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
JMFF026D03+ TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
____________________________________________________________
consensus TCCATTAAAGACAGTAAAGATGAGAGCTTTTGAAGTTAAGGAGAAATGAATTTTGTGTTG
. : . : . : . : . : . :
JMSF043C07+ GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGT
JMSF008G08+ GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGT
JMFF026D03+ GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGTAGAGATGAAG
____________________________________________________________
consensus GAATATTATGGCTCTGGGGGAAAGGTTGCTGATGAAGATGATGGATGGGTAGAGATGAAG