Contig 007388:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026A04Sequence580007388 (4)551007388 (4)ref|XP_010033202.1|47.4PREDICTED: uncharacterized protein LOC104422519 [Eucalyptus grandis]
JMSF043E24Sequence561007388 (4)507007388 (4)

Alignment

This contig is upended


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rJMSF043E24+                          GGTCGGAAAGCTACAGAGCGTATTCTTCTTCTTCCTATCGCAAA
JMSF043E24-                               GGAAAGCTACAGAGCGTATTCTTCTTCTTCCTATCGCAAA
rJMFF026A04+                              GGAAAGCTACAGAGCGTATTCTTCTTCTTCCTATCGCAAA
JMFF026A04-                               GGAAAGCTACAGAGCGTATTCTTCTTCTTCCTATCGCAAA
                      ____________________________________________________________
consensus                             GGTCGGAAAGCTACAGAGCGTATTCTTCTTCTTCCTATCGCAAA
 
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rJMSF043E24+          GCTCCAACAACGCCTTCTTCTTCTTCCTATCGCAAAGCTCCAGTCATCTTCTTCTTCTTC
JMSF043E24-           GCTCCAACAACGCCTTCTTCTTCTTCCTATCGCAAAGCTCCAGTCATCTTCTTCTTCTTC
rJMFF026A04+          GCTCCAACAACGCCTTCTTCTTCTTCCTATCGCAAAGCTCCAGTCATCTTCTTCTTCTTC
JMFF026A04-           GCTCCAACAACGCCTTCTTCTTCTTCCTATCGCAAAGCTCCAGTCATCTTCTTCTTCTTC
                      ____________________________________________________________
consensus             GCTCCAACAACGCCTTCTTCTTCTTCCTATCGCAAAGCTCCAGTCATCTTCTTCTTCTTC
 
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rJMSF043E24+          CTATCGAACCCACAGCTCTACAAGATGTCTTCTTCCTCAACTTCATCATGTATTAGAGTA
JMSF043E24-           CTATCGAACCCACAGCTCTACAAGATGTCTTCTTCCTCAACTTCATCATGTATTAGAGTA
rJMFF026A04+          CTATCGAACCCACAGCTCTACAAGATGTCTTCTTCCTCAACTTCATCATGTATTAGAGTA
JMFF026A04-           CTATCGAACCCACAGCTCTACAAGATGTCTTCTTCCTCAACTTCATCATGTATTAGAGTA
                      ____________________________________________________________
consensus             CTATCGAACCCACAGCTCTACAAGATGTCTTCTTCCTCAACTTCATCATGTATTAGAGTA
 
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rJMSF043E24+          AATATGGAGTACGAGCCAAGTGTGTATTGTAATTGTGGGTTGAAAGCTCCAATTTGCACA
JMSF043E24-           AATATGGAGTACGAGCCAAGTGTGTATTGTAATTGTGGGTTGAAAGCTCCAATTTGCACA
rJMFF026A04+          AATATGGAGTACGAGCCAAGTGTGTATTGTAATTGTGGGTTGAAAGCTCCAATTTGCACA
JMFF026A04-           AATATGGAGTACGAGCCAAGTGTGTATTGTAATTGTGGGTTGAAAGCTCCAATTTGCACA
                      ____________________________________________________________
consensus             AATATGGAGTACGAGCCAAGTGTGTATTGTAATTGTGGGTTGAAAGCTCCAATTTGCACA
 
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rJMSF043E24+          AGTAGAGAATCGGGAAAGCAATTCTTTGGGTGTCAAAGATGGAAGGATGGCAATGGATGT
JMSF043E24-           AGTAGAGAATCGGGAAAGCAATTCTTTGGGTGTCAAAGATGGAAGGATGGCAATGGATGT
rJMFF026A04+          AGTAGAGAATCGGGAAAGCAATTCTTTGGGTGTCAAAGATGGAAGGATGGCAATGGATGT
JMFF026A04-           AGTAGAGAATCGGGAAAGCAATTCTTTGGGTGTCAAAGATGGAAGGATGGCAATGGATGT
                      ____________________________________________________________
consensus             AGTAGAGAATCGGGAAAGCAATTCTTTGGGTGTCAAAGATGGAAGGATGGCAATGGATGT
 
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rJMSF043E24+          GTTTTTTTTCTTTGGAAGGATCACAGTGCAT-AAGGGTTGAAGGTGAGGATGAAGACATA
JMSF043E24-           GTTTTTTTTCTTTGGAAGGATCACAGTGCAT-AAGGGTTGAAGGTGAGGATGAAGACATA
rJMFF026A04+          GTTTTTTTTCTTTGGAAGGATCACAGTGCATGAAGGGTTGAAGGTGAGGATGAAGACATA
JMFF026A04-           GTTTTTTTTCTTTGGAAGGATCACAGTGCATGAAGGGTTGAAGGTGAGGATGAAGACATA
                      ____________________________________________________________
consensus             GTTTTTTTTCTTTGGAAGGATCACAGTGCATGAAGGGTTGAAGGTGAGGATGAAGACATA
 
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rJMSF043E24+          AAGAAGATGGTGGTGTCTTTGAGGTCTGAAATTGCAGTTGTTAAACAATTAATTGTAAAT
JMSF043E24-           AAGAAGATGGTGGTGTCTTTGAGGTCTGAAATTGCAGTTGTTAAACAATTAATTGTAAAT
rJMFF026A04+          AAGAAGATGGTGGTGTCTTTGAGGTCTGAAATTGCAGTTGTTAAACAATTAATTGTAAAT
JMFF026A04-           AAGAAGATGGTGGTGTCTTTGAGGTCTGAAATTGCAGTTGTTAAACAATTAATTGTAAAT
                      ____________________________________________________________
consensus             AAGAAGATGGTGGTGTCTTTGAGGTCTGAAATTGCAGTTGTTAAACAATTAATTGTAAAT
 
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rJMSF043E24+          GAGTATAGTGGTATGAAAAAAGAAAACCAAGTGTTGAGGATCAAGTGTGTTGTTTTCCTA
JMSF043E24-           GAGTATAGTGGTATGAAAAAAGAAAACCAAGTGTTGAGGATCAAGTGTGTTGTTTTCCTA
rJMFF026A04+          GAGTATAGTGGTATGAAAAAAGAAAACCAAGTGTTGAGGATCAAGTGTGTTGTTTTCCTA
JMFF026A04-           GAGTATAGTGGTATGAAAAAAGAAAACCAAGTGTTGAGGATCAAGTGTGTTGTTTTCCTA
                      ____________________________________________________________
consensus             GAGTATAGTGGTATGAAAAAAGAAAACCAAGTGTTGAGGATCAAGTGTGTTGTTTTCCTA
 
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rJMSF043E24+          ATTGTAATTGTGGTCCTTCTAGCAAAAATCTGTAGTTAGAAATT                
JMSF043E24-           ATTGTAATTGTGGTCCTTCTAGCAAAAATCTGTAGTTAGAAATTGTAATGGTTTGACATT
rJMFF026A04+          ATTGTAATTGTGGTCCTTCTAGCAAAAATCTGTAGTTAGAAATTGTAATGGTTTGACATT
JMFF026A04-           ATTGTAATTGTGGTCCTTCTAGCAAAAATCTGTAGTTAGAAATTGTAATGGTTTGACATT
                      ____________________________________________________________
consensus             ATTGTAATTGTGGTCCTTCTAGCAAAAATCTGTAGTTAGAAATTGTAATGGTTTGACATT
 
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JMSF043E24-           GTAATGAAATTTTGGTAAATTACAATT                                 
rJMFF026A04+          GTAATGAAATTTTGGTAAATTACAATT                                 
JMFF026A04-           GTAATGAAATTTTGGTAAATTACAATTTAAGTTTCCAGTTTGCATTGTCCAAAAAAAAAA
                      ____________________________________________________________
consensus             GTAATGAAATTTTGGTAAATTACAATTTAAGTTTCCAGTTTGCATTGTCCAAAAAAAAAA