Contig 007379:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C11Sequence581007379 (8)ref|XP_002283440.1|1e-52PREDICTED: aspartate--tRNA ligase, cytoplasmic [Vitis vinifera]552005617 (4)ref|XP_009791268.1|5e-92PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris]
JMFF023N12Sequence452007379 (8)678014856ref|XP_006345989.1|4e-07PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Solanum tuberosum]
JMFF051N12Sequence622007379 (8)509007379 (8)ref|XP_002283440.1|3e-48PREDICTED: aspartate--tRNA ligase, cytoplasmic [Vitis vinifera]
JMFS041C09Sequence627007379 (8)
JMSF002D09Sequence309007379 (8)ref|XP_002283440.1|2e-09PREDICTED: aspartate--tRNA ligase, cytoplasmic [Vitis vinifera]
JMSF009H06Sequence394007379 (8)771005617 (4)ref|XP_009791268.1|1e-101PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Nicotiana sylvestris]
JMSF026H02Sequence654007379 (8)ref|XP_002283440.1|2e-61PREDICTED: aspartate--tRNA ligase, cytoplasmic [Vitis vinifera]746005617 (4)ref|XP_006345989.1|3e-121PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF051N12-                                                            ACCCTGGAGA
                      ____________________________________________________________
consensus                                                               ACCCTGGAGA
 
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rJMFF051N12-          GTTTTTTTTTTTTTTTACCACTATATGTGAGTTTTCATTCTAATTATATGGTCAATTAAA
                      ____________________________________________________________
consensus             GTTTTTTTTTTTTTTTACCACTATATGTGAGTTTTCATTCTAATTATATGGTCAATTAAA
 
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rJMFF051N12-          CATCAATATTGATAATCATTTTAATTCCACCCTACCACAAAACCTGCAAAATACTTTCAC
                      ____________________________________________________________
consensus             CATCAATATTGATAATCATTTTAATTCCACCCTACCACAAAACCTGCAAAATACTTTCAC
 
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rJMFF051N12-          CAAAACTCATTCTAATTAAGTATTGTTGGTTTGTTGCAGATATTTCCAGTAAACATCAAG
JMFF001C11+                                                                      G
JMSF026H02+                                                                      G
                      ____________________________________________________________
consensus             CAAAACTCATTCTAATTAAGTATTGTTGGTTTGTTGCAGATATTTCCAGTAAACATCAAG
 
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rJMFF051N12-          GGAACAGAGACCACTCCTTCGACATCAACAATGGACTCTTTGCTCAAGCTGGTGGCATAT
JMFF001C11+           GGAACAGAGACTACTCCTTCGACATCAACAATGGACTCTTTGCTCAAGCTGGTGGCATAT
JMSF026H02+           GGAACAGAGACTACTCCTTCGACATCAACAATGGACTCTTTGCTCAAGCTGGTGGCATAT
                      ____________________________________________________________
consensus             GGAACAGAGACTACTCCTTCGACATCAACAATGGACTCTTTGCTCAAGCTGGTGGCATAT
 
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rJMFF051N12-          TTGACCATCTGCCCACTGACGAGATCAGGTGCGACAGTCAACACGCATTGCACGGTGAAT
JMFF001C11+           TTGACCATCTGCCCACTGACGAGATCAGGTGCGACAGTCAACACGCATTGCACGGTGAAT
JMSF026H02+           TTGACCATCTGCCCACTGACGAGATCAGGTGCGACAGTCAACACGCATTGCACGGTGAAT
                      ____________________________________________________________
consensus             TTGACCATCTGCCCACTGACGAGATCAGGTGCGACAGTCAACACGCATTGCACGGTGAAT
 
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rJMFF051N12-          CCACGCTTTCTCACCACAATAAACGCAATCTTCTTCCCGACAGCCCGGATAGTCTGCGCC
JMFF001C11+           CCGCGCTTTCTCACCACAATAAACGCTATCTTCTTCCCGACGGCCCGGATAGTCTGCGCC
JMSF026H02+           CCGCGCTTTCTCACCACAATAAACGCTATCTTCTTCCCGACGGCCCGGATAGTCTGCGCC
                      ____________________________________________________________
consensus             CCGCGCTTTCTCACCACAATAAACGCTATCTTCTTCCCGACGGCCCGGATAGTCTGCGCC
 
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rJMFF051N12-          CTGCCGCGGATGAGGACCTCCTGGTCCTTCAGCTCGGCGGTCAGCGCGCCAATATCCGTC
JMFF001C11+           CTGCCGCGGATGAGGACCTCCTTGTCCTTCAGCTCGGCGGTCAGCGCGCCAATATCCGAC
JMSF002D09+                                            TCGGCGGTCAGCGCGCCAATATCCGAC
JMSF026H02+           CTGCCGCGGATGAGGACCTCCTTGTCCTTCAGCTCGGCGGTCAGCGCGCCAATATCCGAC
                      ____________________________________________________________
consensus             CTGCCGCGGATGAGGACCTCCTTGTCCTTCAGCTCGGCGGTCAGCGCGCCAATATCCGAC
 
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rJMFF051N12-          CACTTGCGGCCGGAGACTGCCTTGGACTTGAGATCGTCGAGCGGAAAGTCGCCGTAGTTA
JMFF001C11+           CACTTGCGGCCGGAGACTGCCTTGGACTTGAGATCGTCGAGCGGAATGTCGCCGTAGTTA
JMSF002D09+           CACTTGCGGCCGGAGACTGCCTTGGACTTGAGATCGTCGAGCGGAATGTCGCCGTAGTTA
JMSF026H02+           CACTTGCGGCCGGAGACTGCCTTGGACTTGAGATCGTCGAGCGGAATGTCGCCGTAGTTA
JMFS041C09+                                                                GTAGTTA
                      ____________________________________________________________
consensus             CACTTGCGGCCGGAGACTGCCTTGGACTTGAGATCGTCGAGCGGAATGTCGCCGTAGTTA
 
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rJMFF051N12-          GCAGCAAGGGGGTCGGGGG                                         
JMFF001C11+           GCAGCAAGGGGGTCGGGGGAGTCATCGATGGAGACGGCGGATACCGCAGCCGACGCAGCG
JMSF002D09+           GCAGCAAGGGGGTCGGGGGAGTCATCGATGGAGACGGCGGATACCGCAGCCGACGCAGCG
JMSF026H02+           GCAGCAAGGGGGTCGGGGGAGTCATCGATGGAGACGGCGGATACCGCAGCCGACGCAGCG
JMFS041C09+           GCAGCAAGGGGGTCGGGGGAGTCATCGATGGAGACGGCGGATACCGCAGCCGACGCAGCA
JMFF051N12+                                 CATCGATGGAGACGGCGGATACCGCAGCCGACGCAGCA
                      ____________________________________________________________
consensus             GCAGCAAGGGGGTCGGGGGAGTCATCGATGGAGACGGCGGATACCGCAGCCGACGCAGCG
 
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JMFF001C11+           GCTGCCTCCTGGCGGCGGCGCTGGCGCTCCAGCTTCGCAGCCTCTTTCTTCGACAGTTTC
JMSF002D09+           GCTGCCTCCTGGCGGCGGCGCTGGCGCTCCAGCTTCGCAGCCTCTTTCTTCGACAGTTTC
JMSF026H02+           GCTGCCTCCTGGCGGCGGCGCTGGCGCTCCAGCTTCGCAGCCTCTTTCTTCGACAGTTTC
JMFS041C09+           GCTGCCTCCTGGCGGCGGCGCTGGCGCTCCAGCTTAGAGGCCTCTTTCTTCGACAGTTTC
JMFF051N12+           GCTGCTTCCTGGCGGCGGCGCTGGCGCTCCAGCTTAGAGGCCTCTTTCTTCGACAGTTTC
                      ____________________________________________________________
consensus             GCTGCCTCCTGGCGGCGGCGCTGGCGCTCCAGCTTCGCAGCCTCTTTCTTCGACAGTTTC
 
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JMFF001C11+           TTGCCGACATCGCCTTCATTTGGAGGGTTTGAGGGCTCAGAAGCCATA            
JMSF002D09+           TTGCCGACATCGCCTTCATTTGGAGGGTTTGAGGGCTCAGAAGCCATA            
JMSF026H02+           TTGCCGACATCGCCTTCATTTGGAGGGTTTGAGGGCTCAGAAGCCATA            
JMFS041C09+           TTGCCGCCATCGCCTTCATTTGGAGGGTTTGAGGGCTCAGAAGACATACTTTGGAGTTTG
JMFF051N12+           TTGCCGCCATCGCCTTCATTTGGAGGGTTGNAGGGCTCAGAAGACATACTTTGGAGTTTG
                      ____________________________________________________________
consensus             TTGCCGACATCGCCTTCATTTGGAGGGTTTGAGGGCTCAGAAGCCATACTTTGGAGTTTG
 
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JMFS041C09+           TGGATTTGGACAAGATCCTTCGGAGATTTTGGAGAGTCCGTGTTGAGTTGCCGAGGTTCA
JMFF051N12+           TGGATTTGGACAAGATCCTTCGGAGATTTTGGAGAGTCCGTGTTGAGTTGCCGAGGTTCA
                      ____________________________________________________________
consensus             TGGATTTGGACAAGATCCTTCGGAGATTTTGGAGAGTCCGTGTTGAGTTGCCGAGGTTCA
 
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JMFS041C09+           CCGGGGTGATTGTGCGGCTTGACGGAGTGTTGCTATGCTCCTCTTTGCTGTTGTTGCTGC
JMSF009H06+                                                          CTGTTGTTGCTGC
JMFF051N12+           CCGGGGTGATTGTGCGGCTTGACGGAGTGTTGCTATGCTCCTCTTTGCTGTTGTTGCTGC
JMFF023N12+                                                          CTGTTGTTGCTGC
                      ____________________________________________________________
consensus             CCGGGGTGATTGTGCGGCTTGACGGAGTGTTGCTATGCTCCTCTTTGCTGTTGTTGCTGC
 
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JMFS041C09+           TTGCTGAGGGAGTGAGGGGCAAACGGCGAGAGTCCGAGTCTCCGAGAGGGACGAACGTCG
JMSF009H06+           TTGCTGAGGGAGTGAGGGGCAAACGGCGAGAGTCCGAGTCTCCGAGAGGGACGAACGTCG
JMFF051N12+           TTGCTGAGGGAGTGAGGGGCAAACGGCGAGAGTCCGAGTCTCCGAGAGGGACGAACGTCG
JMFF023N12+           TTGCTGAGGGAGTGAGGGGCAAACGGCGAGAGTCCGAGTCTCCGAGAGGGACGAACGTCG
                      ____________________________________________________________
consensus             TTGCTGAGGGAGTGAGGGGCAAACGGCGAGAGTCCGAGTCTCCGAGAGGGACGAACGTCG
 
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JMFS041C09+           CCCGGTGACCTGGTGCGACTGCTGCAACTGTGAAGGCGGCGGGCTGCTGCGACTGCCAGA
JMSF009H06+           CCCGGTGACCTGGTGCGACTGCTGCAACTGTGAAGGCGGCGGGCTGCTGCGACTGCCAGA
JMFF051N12+           CCCGGTGACCTGGTGCGACTGCTGCAACTGTGAAGGCGGCGGGCTGCTGCGACTGCCAGA
JMFF023N12+           CCCGGTGACCTGGTGCGACTGCTGCAACTGTGAAGGCGGCGGGCTGCTGCGACTGCCAGA
                      ____________________________________________________________
consensus             CCCGGTGACCTGGTGCGACTGCTGCAACTGTGAAGGCGGCGGGCTGCTGCGACTGCCAGA
 
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JMFS041C09+           CTGGACTGGTGACCTTGTGTCTGGGCAGTCTGGCGAGTTAGAGGCGGCAGTGGCGGAATA
JMSF009H06+           CTGGACTGGTGACCTTGTGTCTGTGCAGTCTGGCGAGTTAGAGGCGGCAGTGGCGGAATA
JMFF051N12+           CTGGACTGGTGACCTTGTGTCTGGGCAGTCTGGCGAGTTAGAGGCGGCAGTGGCGGAATA
JMFF023N12+           CTGGACTGGTGACCTTGTGTCTGGGCAGTCTGGCGAGTTAGAGGCGGCAGTGGCGGAATA
                      ____________________________________________________________
consensus             CTGGACTGGTGACCTTGTGTCTGGGCAGTCTGGCGAGTTAGAGGCGGCAGTGGCGGAATA
 
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JMFS041C09+           GGCGACTGGCGGTGGCAGTGGCGGAATAGGCGACTGGCGGTGGCAGTGGCGGAATAGGCG
JMSF009H06+           GGCGACTGGCGGTGGCAGTGGCGGAATAGGCGACTGGCGGTGGCAGTGGCGGAATAGGCG
JMFF051N12+           GGCGACTGGCGGTGGCAGTGGCGGAATAGGCGACTGGCGGTGGCAGTGGCGGAATAGGCG
JMFF023N12+           GGCGACTGGCGGTGGCAGTGGCGGAATAGGCGACTGGCGGTGGCAGTGGCGGAATAGGCG
                      ____________________________________________________________
consensus             GGCGACTGGCGGTGGCAGTGGCGGAATAGGCGACTGGCGGTGGCAGTGGCGGAATAGGCG
 
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JMFS041C09+           ACTGGCGGTGGCGGTGGCGGTGGCAGTGGCGGAATAGCCGACTGGCGGTGGCGGAATGGC
JMSF009H06+           ACTGGCGGTGGCGGTGGCGGTGGCAGTGGCGGAATAGCCGACTGGCGGTGGCGGAATGGC
JMFF051N12+           ACTGGCGGTGGCGGTGGCGGTGGCAGTGGCGGAATAGCCGACTGGCGGTGGCGGAATGGC
JMFF023N12+           ACTGGCGGTGGCGGTGGCGGTGGCAGTGGCGGAATAGCCGACTGGCGGTGGCGGAATGGC
                      ____________________________________________________________
consensus             ACTGGCGGTGGCGGTGGCGGTGGCAGTGGCGGAATAGCCGACTGGCGGTGGCGGAATGGC
 
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JMFS041C09+           GAAGGCGAAGTCGCGACTAG                                        
JMSF009H06+           GAAGGCGAAGTCGCGACTAGCGAAGAGAACTCTAGGGTTA                    
JMFF051N12+           GAAGGCGAAGTCGCGACTAGCGAAGAGAACTCTAGGGTTA                    
JMFF023N12+           GAAGGCGAAGTCGCGACTAGCGAAGAGAACTCTAGGGTTAGTGTTGGCTGTTGTCTGAAT
                      ____________________________________________________________
consensus             GAAGGCGAAGTCGCGACTAGCGAAGAGAACTCTAGGGTTAGTGTTGGCTGTTGTCTGAAT