Contig 007366:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M06Sequence412007366 (5)ref|XP_004231747.1|5e-09PREDICTED: rRNA-processing protein CGR1 [Solanum lycopersicum]690007366 (5)ref|XP_009599647.1|9e-44PREDICTED: coiled-coil domain-containing protein 86 [Nicotiana tomentosiformis]
JMFF025L11Sequence470007366 (5)ref|XP_003553978.1|1e-12PREDICTED: MAP7 domain-containing protein 2-like [Glycine max]803007366 (5)ref|XP_009599647.1|5e-57PREDICTED: coiled-coil domain-containing protein 86 [Nicotiana tomentosiformis]
JMFS042H03Sequence589007366 (5)ref|XP_009599647.1|9e-29PREDICTED: coiled-coil domain-containing protein 86 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF025L11-                                   ATCTTGATTTGTTATAGATTTTTAATGTACCAATT
                      ____________________________________________________________
consensus                                      ATCTTGATTTGTTATAGATTTTTAATGTACCAATT
 
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rJMFF025L11-          CAATGTCACAGTTTATGTGCTACATTGAGACTACATCATTGAAATTGAAATAAAAGGCAG
                      ____________________________________________________________
consensus             CAATGTCACAGTTTATGTGCTACATTGAGACTACATCATTGAAATTGAAATAAAAGGCAG
 
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rJMFF025L11-          CAAACAAAATCATACCATTTGGTTTAAGAAGCACAAGTAAAGGCCTAAAGGGGCAATAAA
                      ____________________________________________________________
consensus             CAAACAAAATCATACCATTTGGTTTAAGAAGCACAAGTAAAGGCCTAAAGGGGCAATAAA
 
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rJMFF021M06-                                   CTTAAGAAGATCATCAGAAACAACCTTGAGGAGCT
rJMFF025L11-          AGAGATGATACTACTTGTTGCCGGCCTTAAGAAGATCATCAGAAACAACCTTGAGGAGCT
                      ____________________________________________________________
consensus             AGAGATGATACTACTTGTTGCCGGCCTTAAGAAGATCATCAGAAACAACCTTGAGGAGCT
 
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rJMFF021M06-          TCTTATGCTTGGCAGATTTGGCAATTTTCTTAAGAGTCTTCGGGTTAGTGATCTTCTGAA
rJMFF025L11-          TCTTATGCTTGGCAGATTTGGCAATTTTCTTAAGAGTCTTCGGGTTAGTGATCTTCTGAA
                      ____________________________________________________________
consensus             TCTTATGCTTGGCAGATTTGGCAATTTTCTTAAGAGTCTTCGGGTTAGTGATCTTCTGAA
 
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rJMFF021M06-          ACTTGGTGCCAGACTTGAGAATGTTCTCCTTCTTCCTCTTCTCCCTCTCCTCCCTCTTCT
rJMFF025L11-          ACTTGGTGCCAGACTTGAGAATGTTCTCCTTCTTCCTCTTCTCCCTCTCCTCCCTCTTCT
                      ____________________________________________________________
consensus             ACTTGGTGCCAGACTTGAGAATGTTCTCCTTCTTCCTCTTCTCCCTCTCCTCCCTCTTCT
 
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rJMFF021M06-          GCCTCTTCTCTATCTTGTTCTGCCTTATCTCCTCCTTCAGTTCGTTCATTCTCTCCTTAT
rJMFF025L11-          GCCTCTTCTCTATCTTGTTCTGCCTTATCTCCTCCTTCAGTTCGTTCATTCTCTCCTTAT
                      ____________________________________________________________
consensus             GCCTCTTCTCTATCTTGTTCTGCCTTATCTCCTCCTTCAGTTCGTTCATTCTCTCCTTAT
 
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rJMFF021M06-          ACGCCTTCTTTATCTCCTTTTCCTTCACCCTCTGCTCCAGGGTCTTCCCCTTCCGGCTCA
rJMFF025L11-          ACGCCTTCTTTATCTCCTTTTCCTTCACCCTCTGCTCCAGGGTCTTCCCCTTCCGGCTCA
                      ____________________________________________________________
consensus             ACGCCTTCTTTATCTCCTTTTCCTTCACCCTCTGCTCCAGGGTCTTCCCCTTCCGGCTCA
 
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rJMFF021M06-          CCTGCACTGCCGACGACCTGTGCGTCCTCGCCTGCTTCCACTTCCTCCCCGACACCCTCC
rJMFF025L11-          CCTGCACTGCCGACGACCTGTGCGTCCTCGCCTGCTTCCACTTCCTCCCCGACACCCTCC
JMFF025L11+                                                                ACCCTCC
                      ____________________________________________________________
consensus             CCTGCACTGCCGACGACCTGTGCGTCCTCGCCTGCTTCCACTTCCTCCCCGACACCCTCC
 
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rJMFF021M06-          CCGCTATAACACCATCGTACGTCACCTTCCCCA-CCACCGCCTTGTTCGGATCCTCAGAA
rJMFF025L11-          CCGCTATAACACCATCGTACGTCACCTTCCCCA-CCACCGCCTTGTTCGGATCCTCAGAA
JMFF025L11+           CCGCTATAACACCATCGTACGTCACCTTCCCCACCCACCGCCTTGTTCGGATCCTCAGAA
                      ____________________________________________________________
consensus             CCGCTATAACACCATCGTACGTCACCTTCCCCA-CCACCGCCTTGTTCGGATCCTCAGAA
 
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rJMFF021M06-          GAAGGGACCGCCTGCCTTTTCAACGGAGGGGGGCCATTTTCCAATTCCACCTCCATGGCG
rJMFF025L11-          GAAGGGACCGCCTGCCTTTTCAACGGAGGGGGGCCATTTTCCAATTCCACCTCCATGGCG
JMFF025L11+           GAAGGGACCGCCTGCCTTTTCAACGGAGGGGGGCCATTTTCCAATTCCACCTCCATGGCG
                      ____________________________________________________________
consensus             GAAGGGACCGCCTGCCTTTTCAACGGAGGGGGGCCATTTTCCAATTCCACCTCCATGGCG
 
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rJMFF021M06-          GCCTCACCTTCCTCCCCCGGGGCTTCCTTCTCTGCCCTCTTTCGCTTGTAAGTTTTGCCT
rJMFF025L11-          GCCTCACCTTCCTCCCCCGGGGCTTCCTTCTCTGCCCTCTTTCGCTTGTAAGTTTTGCCT
JMFF025L11+           GCCTCACCTTCCTCCCCCGGGGCTTCCTTCTCTGCCCTCTTTCGCTTGTAAGTTTTGCCT
JMFS042H03+                             GGGGCTTCCTTCTCTGCCCTCTTTCGCTTGTAAGTTTTGCCT
JMFF021M06+                   TTCCTCCCCCGGGGCTTCCTTCTCTGCCCTCTTTCGCTTGTAAGTTTTGCCT
                      ____________________________________________________________
consensus             GCCTCACCTTCCTCCCCCGGGGCTTCCTTCTCTGCCCTCTTTCGCTTGTAAGTTTTGCCT
 
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rJMFF021M06-          CCG                                                         
rJMFF025L11-          CCGAAACCCTCATCCAGGCACCTAAAATCAATGGTACATGCCATATTCTCTTCGCTCACA
JMFF025L11+           CCGAAACCCTCATCCAGGCACCTAAAATCAATGGTACATGCCATATTCTCTTCGCTCACA
JMFS042H03+           CCGAAACCCTCATCCAGGCACCTAAAATCAATGGTACATGCCATATTCTCTTCGCTCACA
JMFF021M06+           CCGAAACCCTCATCCAGGCACCTAAAATCAATGGTACATGCCATATTCTCTTCGCTCACA
                      ____________________________________________________________
consensus             CCGAAACCCTCATCCAGGCACCTAAAATCAATGGTACATGCCATATTCTCTTCGCTCACA
 
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rJMFF025L11-          GCAGCACCTCTAAATCTCTAATCGAACAAGGAGATCAACCCTAGTACTA           
JMFF025L11+           GCAGCACCTCTAAATCTCTAATCGAACAAGGAGATCAACCCTAGTACTAG---ACTGGAG
JMFS042H03+           GCAGCACCTCTAAATCTCTAATCGAACAAGGAGATCAACCCTAGTACTAG---ACTGGAG
JMFF021M06+           GCAGCACCTCTAAATCTCTAATCGAACAAGGAGATCAACCCTAGTACTAGACTACTGGAG
                      ____________________________________________________________
consensus             GCAGCACCTCTAAATCTCTAATCGAACAAGGAGATCAACCCTAGTACTAG---ACTGGAG
 
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JMFF025L11+           GGCTGGAGGGTAGAGCGTGCGACGGCGACGGCAGGGTGGAGCAGAGGAGACGGAGGCAAC
JMFS042H03+           GGCTGGAGGGTAGAGCGTGCGACGGCGACGGCAGGGTGGAGCAGAGGAGACGGAGGCAAC
JMFF021M06+           GGCTGGAGGGTAGAGCGTGCGACGGCGACGGCAGGGTGGAGCAGAGGAGACGGAGGCAAC
                      ____________________________________________________________
consensus             GGCTGGAGGGTAGAGCGTGCGACGGCGACGGCAGGGTGGAGCAGAGGAGACGGAGGCAAC
 
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JMFF025L11+           GACCTGGAGCAGAGGAGAACAGTCGCGACTCGCGTGTAGGCTTGGTGCCGGTGGGCGGTG
JMFS042H03+           GACCTGGAGCAGAGGAGAACAGTCGCGACTCGCGTGTAGGCTTGGTGCCGGTGGGCGGTG
JMFF021M06+           GACCTGGAGCAGAGGAGAACAGTCGCGACTCGCGTGTAGGCTTGGTGCCGGTGGGCGGTG
                      ____________________________________________________________
consensus             GACCTGGAGCAGAGGAGAACAGTCGCGACTCGCGTGTAGGCTTGGTGCCGGTGGGCGGTG
 
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JMFF025L11+           GTGGGTGAGAGACCTACAGTAGTTCTTCGGCTTCTTCTCAGACTGC              
JMFS042H03+           GTGGGTGAGAGACCTACAGTAGTTCTTCGGCTTCTTCTCAGACTGCAGAGAGAAAGAGAC
JMFF021M06+           GTGGGTGAGAGACCTACAGTAGTTCTTCGGCTTCTTCTCAGACTGCAGAGAGAAAGAGAC
                      ____________________________________________________________
consensus             GTGGGTGAGAGACCTACAGTAGTTCTTCGGCTTCTTCTCAGACTGCAGAGAGAAAGAGAC
 
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JMFS042H03+           GGCCAGTACTTCTGCAGTAATCAATTTTAGGGTTGCTGGGTTGGGGTCTT          
JMFF021M06+           GGCCAGTACTTCTGCAGTAATCAATTTTAGGGTTGCTGGGTTGGGGTCTTGGAGACGCTT
                      ____________________________________________________________
consensus             GGCCAGTACTTCTGCAGTAATCAATTTTAGGGTTGCTGGGTTGGGGTCTTGGAGACGCTT