Contig 007364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021E17Sequence541007364 (12)ref|XP_004239927.1|5e-70PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.670007364 (12)ref|XP_004239927.1|4e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.
JMFF024A13Sequence371007364 (12)ref|XP_004239927.1|2e-62PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.701007364 (12)ref|XP_004239927.1|4e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.
JMFF032O16Sequence614007364 (12)ref|XP_004239927.1|2e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.649007364 (12)ref|XP_004239927.1|2e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.
JMSF042D16Sequence717007364 (12)ref|XP_004239927.1|4e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.674007364 (12)ref|XP_004239927.1|2e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.
JMSF043N01Sequence745007364 (12)ref|XP_004239927.1|7e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.679007364 (12)ref|XP_004239927.1|3e-69PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.
JMSF044N01Sequence678007364 (12)ref|XP_004239927.1|1e-66PREDICTED: 60S ribosomal protein L35a-3 [Solanum lycopersicum] ref|XP_006355673.214007364 (12)

Alignment

This contig is upended


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JMSF043N01+                                    TTTTTTTTTTACACCAATAAAAAATTCAAATTAAA
                      ____________________________________________________________
consensus                                      TTTTTTTTTTACACCAATAAAAAATTCAAATTAAA
 
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rJMFF021E17-                                             GTATAAAAATGTGCAAATTCCATAT
rJMSF043N01-                                        ATTTGGTATAAAAATGTGCAAATTCCATAT
JMSF044N01+                                            TGGTATAAAAATGNGCAAATTCCATAT
rJMFF024A13-                                        ATTTGGTATAAAAATGTGCAAATTCCATAT
rJMFF032O16-                                                                   TAT
JMSF043N01+           GTGGTAGTTTCACTCAAAATACACTCTTCAATTTGGTATAAAAATGTGCAAATTCCATAT
JMSF042D16+                  TTTCGCTCAAAATACACTCTTCAATTTGGTATAAAAATGTGCAAATTCCATAT
rJMSF042D16-                                                     ATGTGCAAATTCCATAT
                      ____________________________________________________________
consensus             GTGGTAGTTTCGCTCAAAATACACTCTTCAATTTGGTATAAAAATGTGCAAATTCCATAT
 
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rJMFF021E17-          GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
rJMSF043N01-          GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
JMSF044N01+           GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
rJMFF024A13-          GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
JMFF032O16+                                           CATTAACAGTAGTATACGCATACACGAG
rJMFF032O16-          GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
JMSF043N01+           GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
JMSF042D16+           GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
rJMSF042D16-          GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
                      ____________________________________________________________
consensus             GGCTAGTAGGATCTGCCAAAGCCATAGTTAAACATTAACAGTAGTATACGCATACACGAG
 
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rJMSF044N01-                                               AAAACTCCGAACTACNATCATTT
rJMFF021E17-          AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
rJMSF043N01-          AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
JMSF044N01+           AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
rJMFF024A13-          AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
JMFF032O16+           AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
rJMFF032O16-          AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
JMSF043N01+           AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
JMSF042D16+           AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
rJMSF042D16-          AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
JMFF021E17+                                                                      T
                      ____________________________________________________________
consensus             AAAACTCCAAAATGAGCATGTAGCATATAATCACGAGAAAACTCCAAACTACAATCATTT
 
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rJMSF044N01-          CTATTACTCAAAACANGGACAAAGAGGCTAAAAAGAATTCCGCANAACACGGGGCAGTAA
rJMFF021E17-          CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
rJMSF043N01-          CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
JMSF044N01+           CTATTACTCAAAACAAGGACAAAGAGGNTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
rJMFF024A13-          CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
JMFF032O16+           CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
rJMFF032O16-          CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
JMSF043N01+           CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
JMSF042D16+           CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
rJMSF042D16-          CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
JMFF021E17+           CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
                      ____________________________________________________________
consensus             CTATTACTCAAAACAAGGACAAAGAGGCTAAAAAGAATTCCGCAGAACACAGGGCAGTAA
 
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rJMSF044N01-          ACTCTATCNNTTTTGTTAGGATGCAGTCCTATGACTCACTGATGACCTTGAANCTGGCAT
rJMFF021E17-          ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
rJMSF043N01-          ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
JMSF044N01+           ACTNTATCTATTTTGTTAGGATGCAGTCCTATAACTCANTGATGACCTTGAATCTGGCAT
rJMFF024A13-          ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
JMFF032O16+           ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
rJMFF032O16-          ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
JMSF043N01+           ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
JMSF042D16+           ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
rJMSF042D16-          ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
JMFF021E17+           ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
                      ____________________________________________________________
consensus             ACTCTATCTATTTTGTTAGGATGCAGTCCTATAACTCACTGATGACCTTGAATCTGGCAT
 
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rJMSF044N01-          CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAANACCCTAACCTTATCTCCCAT
rJMFF021E17-          CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
rJMSF043N01-          CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
JMSF044N01+           CTTCACCTTCCNTGCTTATATGTTGCTNGGATACATGAACACCCTAACCTTATCTNCCAT
rJMFF024A13-          CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
JMFF032O16+           CTTCACCTTCC---CTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
rJMFF032O16-          CTTCACCTTCC---CTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
JMSF043N01+           CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
JMSF042D16+           CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
rJMSF042D16-          CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
JMFF024A13+                                                            TTATCTCCCAT
JMFF021E17+           CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
                      ____________________________________________________________
consensus             CTTCACCTTCCCTGCTTATATGTTGCTTGGATACATGAACACCCTAACCTTATCTCCCAT
 
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rJMSF044N01-          GG                                                          
rJMFF021E17-          GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
rJMSF043N01-          GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
JMSF044N01+           GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
rJMFF024A13-          GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
JMFF032O16+           GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
rJMFF032O16-          GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
JMSF043N01+           GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
JMSF042D16+           GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
rJMSF042D16-          GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
JMFF024A13+           GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
JMFF021E17+           GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
                      ____________________________________________________________
consensus             GGATTTAGGCGGAAGATTGGACTTGAACTTAGCTCTAACAACGCCGCTATTGCCGTGAGG
 
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rJMFF021E17-          CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
rJMSF043N01-          CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
JMSF044N01+           CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
rJMFF024A13-          CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
JMFF032O16+           CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
rJMFF032O16-          CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
JMSF043N01+           CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
JMSF042D16+           CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
rJMSF042D16-          CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
JMFF024A13+           CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
JMFF021E17+           CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
                      ____________________________________________________________
consensus             CCTGCAGACCTTTCCCCAGATGCAGCGGTAGTGAGAGCCGCTCTTCTTCGTTTTGGCCTT
 
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rJMFF021E17-          GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
rJMSF043N01-          GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
JMSF044N01+           GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCNTTAGTGTTCACTCC
rJMFF024A13-          GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
JMFF032O16+           GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
rJMFF032O16-          GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
JMSF043N01+           GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
JMSF042D16+           GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
rJMSF042D16-          GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
JMFF024A13+           GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
JMFF021E17+           GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
                      ____________________________________________________________
consensus             GTACACGTACGCCATACGCTTTCCCTGGTACCAATCAACTTCCTCCTTAGTGTTCACTCC
 
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rJMFF021E17-          CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
rJMSF043N01-          CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
JMSF044N01+           CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTNTTGTAACCTAG
rJMFF024A13-          CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
JMFF032O16+           CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
rJMFF032O16-          CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
JMSF043N01+           CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
JMSF042D16+           CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
rJMSF042D16-          CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
JMFF024A13+           CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
JMFF021E17+           CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
                      ____________________________________________________________
consensus             CTCGATCTGAATAAGCGACGTGTTTGGATACTGGTTCGACTTCGACCTCTTGTAACCTAG
 
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rJMFF021E17-          AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
rJMSF043N01-          AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
JMSF044N01+           AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
rJMFF024A13-          AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTC  
JMFF032O16+           AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
rJMFF032O16-          AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
JMSF043N01+           AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
JMSF042D16+           AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
rJMSF042D16-          AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
JMFF024A13+           AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
JMFF021E17+           AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
                      ____________________________________________________________
consensus             AATTGTTCCTCTGGTATACAGCCTGACACGCTCTCCTTGACGTTCCTTAACCATTTTCGC
 
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rJMFF021E17-          TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGG               
rJMSF043N01-          TGGCGGATGGTGGTTGCGCTGCTGCTGACCGC                            
JMSF044N01+           TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAA                  
JMFF032O16+           TGGCGGATGGTGGTTGCGCTGTTGCTGACCGCCGGAGCCTAACGGAGTC           
rJMFF032O16-          TGGCGGATGGTGGTTGCGCTGTTGCTGACCGCCGGAGCCTAACGGAGTC           
JMSF043N01+           TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGGAGTC           
JMSF042D16+           TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGGAGTCGAGTGC     
rJMSF042D16-          TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGGAGTCGAGTGC     
JMFF024A13+           TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGGAGTCGAGTGC     
JMFF021E17+           TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGGAGTCGAGTGCAAAAG
                      ____________________________________________________________
consensus             TGGCGGATGGTGGTTGCGCTGCTGCTGACCGCCGGAGCCTAACGGAGTCGAGTGCAAAAG