clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF016C24 | Sequence | 556 | 007362 (8) | ref|XP_009795696.1| | 1e-35 | PREDICTED: polyadenylate-binding protein RBP45 [Nicotiana sylvestris] | 778 | 002664 (10) | ref|XP_006346222.1| | 1e-67 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
JMFF016N14 | Sequence | 556 | 007362 (8) | gb|EYU33637.1| | 3e-26 | hypothetical protein MIMGU_mgv1a007175mg [Erythranthe guttata] | 659 | 002664 (10) | ref|XP_006346222.1| | 4e-39 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
JMFF020P12 | Sequence | 482 | 007362 (8) | sp|Q9LEB4.1|RBP45_NICPL | 2e-20 | RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei | 757 | 002664 (10) | ref|XP_006346222.1| | 2e-59 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
JMFF022F11 | Sequence | 512 | 007362 (8) | sp|Q9LEB4.1|RBP45_NICPL | 1e-27 | RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei | 697 | 002664 (10) | ref|XP_006346222.1| | 1e-42 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
JMFF025F08 | Sequence | 554 | 007362 (8) | sp|Q9LEB4.1|RBP45_NICPL | 6e-37 | RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei | 708 | 002664 (10) | ref|XP_006346222.1| | 2e-60 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
JMFF041O11 | Sequence | 662 | 007362 (8) | ref|XP_006346222.1| | 1e-57 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] | 551 | 002664 (10) | ref|XP_006346222.1| | 4e-18 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
JMFF044C11 | Sequence | 646 | 007362 (8) | ref|XP_006346222.1| | 1e-56 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] | 312 | 002664 (10) | |||
JMSF015A07 | Sequence | 396 | 007362 (8) | ref|XP_009795696.1| | 8e-05 | PREDICTED: polyadenylate-binding protein RBP45 [Nicotiana sylvestris] | 798 | 002664 (10) | ref|XP_006346222.1| | 9e-88 | PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFF041O11+ GTAGTA
____________________________________________________________
consensus GTAGTA
. : . : . : . : . : . :
JMFF044C11+ CATCAGCAGCCAAATCTCCAACAAAAATGGTGTAGTCCGGAGTATCATCCCG
JMFF041O11+ ATCATTCACATCAGCAGCCAAATCTCCAACAANAATGGTGTAGTCCGGAGTATCATCCCG
____________________________________________________________
consensus ATCATTCACATCAGCAGCCAAATCTCCAACAAAAATGGTGTAGTCCGGAGTATCATCCCG
. : . : . : . : . : . :
JMFF016N14+ TGCTCAGAATTTGGCAT
JMFF044C11+ CTTCTCACCAGCTCCAAGTGTTGCCCAATTCAACCTAAAATTCTGCTCAGAATTTGGCAT
JMFF025F08+ TTCTGCTCAGAATTTGGCAT
JMFF041O11+ CTTCTCACCAGCTCCAAGTGTTGCCCAATTCAACCTAAAATTCTGCTCAGAATTTGGCAT
JMFF016C24+ TTCTGCTCAGAATTTGGCAT
____________________________________________________________
consensus CTTCTCACCAGCTCCAAGTGTTGCCCAATTCAACCTAAAATTCTGCTCAGAATTTGGCAT
. : . : . : . : . : . :
JMFF016N14+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF044C11+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF025F08+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF041O11+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF022F11+ TATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF016C24+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF020P12+ GAC
____________________________________________________________
consensus AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
. : . : . : . : . : . :
JMFF016N14+ AAAACCATACCCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF044C11+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF025F08+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF041O11+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF022F11+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF016C24+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCCTGTTACGGATGACCTTTGAGGAAGTAA
JMFF020P12+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
____________________________________________________________
consensus AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
. : . : . : . : . : . :
JMFF016N14+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF044C11+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF025F08+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF041O11+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF022F11+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMSF015A07+ ACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF016C24+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF020P12+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
____________________________________________________________
consensus GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
. : . : . : . : . : . :
JMFF016N14+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF044C11+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF025F08+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF041O11+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF022F11+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMSF015A07+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF016C24+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF020P12+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
____________________________________________________________
consensus CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
. : . : . : . : . : . :
JMFF016N14+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF044C11+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF025F08+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF041O11+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF022F11+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMSF015A07+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF016C24+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF020P12+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
____________________________________________________________
consensus AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
. : . : . : . : . : . :
JMFF016N14+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF044C11+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF025F08+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF041O11+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF022F11+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMSF015A07+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF016C24+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF020P12+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
____________________________________________________________
consensus GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
. : . : . : . : . : . :
JMFF016N14+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF044C11+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF025F08+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF041O11+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF022F11+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMSF015A07+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF016C24+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF020P12+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
____________________________________________________________
consensus ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
. : . : . : . : . : . :
JMFF016N14+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF044C11+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF025F08+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF041O11+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF022F11+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMSF015A07+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF016C24+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF020P12+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
____________________________________________________________
consensus CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
. : . : . : . : . : . :
JMFF016N14+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGA
JMFF044C11+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGAC
JMFF025F08+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF041O11+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF022F11+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMSF015A07+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF016C24+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF020P12+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAACGACAAC
____________________________________________________________
consensus AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAACGACAAC