Contig 007359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020F08Sequence593007359 (5)731007359 (5)
JMFN029H10Sequence582007359 (5)
JMSF039M17Sequence651007359 (5)619007359 (5)

Alignment

This contig is upended


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rJMSF039M17-                                           AGCCTGTGTGCCGTTACAGTAGTTCCC
JMSF039M17+           AGCCAAATAAAAGTGTAAGCATAAATTAAAGACAGCCTGTGTGCCGTTACAGTAG-TCCC
rJMFF020F08-                                           AGCCTGTGTGCCGTTACAGTAG-TCCC
                      ____________________________________________________________
consensus             AGCCAAATAAAAGTGTAAGCATAAATTAAAGACAGCCTGTGTGCCGTTACAGTAG-TCCC
 
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rJMSF039M17-          AGAAACTAATATGTGCACAAGATGATGCTCGCACAATGAAACGTAACAAGGTGCACTTGA
JMSF039M17+           AGAAACTAATATGTGCACAAGATGATGCTCGCACAATGAAACGTAACAAGGTGCACTTGA
rJMFF020F08-          AGAAACTAATATGTGCACAAGATGATGCTCGCACAATGAAACGTAACAAGGTGCACTTGA
                      ____________________________________________________________
consensus             AGAAACTAATATGTGCACAAGATGATGCTCGCACAATGAAACGTAACAAGGTGCACTTGA
 
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rJMSF039M17-          GTAGTAACACCAAAAACGATTATCAACACAGTGTGCAGCACCCGTGTGAATATCACACCA
JMSF039M17+           GTAGTAACACCAAAAACGATTATCAACACAGTGTGCAGCACCCGTGTGAATATCACACCA
rJMFF020F08-          GTAGTAACACCAAAAACGATTATCAACACAGTGTGCAGCACCCGTGTGAATATCACACCA
                      ____________________________________________________________
consensus             GTAGTAACACCAAAAACGATTATCAACACAGTGTGCAGCACCCGTGTGAATATCACACCA
 
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rJMSF039M17-          AAATCCTAATCAGACCTTACTAAATAGCACACATGTGTACACGGAAGGAAAAAGAGCAGA
JMSF039M17+           AAATCCTAATCAGACCTTACTAAATAGCACACATGTGTACACGGAAGGAAAAAGAGCAGA
JMFN029H10+                    TCAGACCTTGTTAAATAACACACATGTGTACGCGGAAGGAAAATGAGCAGA
rJMFF020F08-          AAATCCTAATCAGACCTTACTAAATAGCACACATGTGTACACGGAAGGAAAATGAGCAGA
JMFF020F08+                 TAATCAGACCTTACTAAATAGCACACATGTGTACACGGAAGGAAAATGAGCAGA
                      ____________________________________________________________
consensus             AAATCCTAATCAGACCTTACTAAATAGCACACATGTGTACACGGAAGGAAAATGAGCAGA
 
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rJMSF039M17-          TATCGACCGAAACGCCCAAGAAAGGTTGCCT-GGACTGTGCACATTATAGTCCAAAGTCA
JMSF039M17+           TATCGACCGAAACGCCCAAGAAAGGTTGCCT-GGACTGTGCACATTATAGTCCAAAGTCA
JMFN029H10+           TATGGGCCGAAACGCCCAAGAGAGGGGGCGTGGGAGTGGGCACATTATAGTCCAAAGTCA
rJMFF020F08-          TATCGACCGAAACGCCCAAGAAAGGTTGCCT-GGACTGTGCACATTATAGTCCAAAGTCA
JMFF020F08+           TATCGACCGAAACGCCCAAGAAAGGTTGCCT-GGACTGTGCACATTATAGTCCAAAGTCA
                      ____________________________________________________________
consensus             TATCGACCGAAACGCCCAAGAAAGGTTGCCT-GGACTGTGCACATTATAGTCCAAAGTCA
 
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rJMSF039M17-          CAAGCTCATTCATGTAACGCAGCCTAAACTTGTGAATACTCGTGGTGTCACCCTTAGAAG
JMSF039M17+           CAAGCTCATTCATGTAACGCAGCCTAAACTTGTGAATACTCGTGGTGTCACCCTTAGAAG
JMFN029H10+           CAAGTGCGTTCATGTGGCGCAGCCGAAACTTGTGAATACTGGTGGGGTCACCCTTAGAAG
rJMFF020F08-          CAAGCTCATTCATGTAACGCAGCCTAAACTTGTGAATACTCGTGGTGTCACCCTTAGAAG
JMFF020F08+           CAAGCTCATTCATGTAACGCAGCCTAAACTTGTGAATACTCGTGGTGTCACCCTTAGAAG
                      ____________________________________________________________
consensus             CAAGCTCATTCATGTAACGCAGCCTAAACTTGTGAATACTCGTGGTGTCACCCTTAGAAG
 
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rJMSF039M17-          CCTCCCGACGATTAAGAACAGCTGCCCACACATCTATTACGCCGATCAACTTGAGAGCCT
JMSF039M17+           CCTCCCGACGATTAAGAACAGCTGCCCACACATCTATTACGCCGATCAACTTGAGAGCCT
JMFN029H10+           CCTCCGGGGGATTAAGAACAGCTGCCCACACATGTATTACGCCGATCAACGTGAGAGCCT
rJMFF020F08-          CCTCCCGACGATTAAGAACAGCTGCCCACACATCTATTACGCCGATCAACTTGAGAGCCT
JMFF020F08+           CCTCCCGACGATTAAGAACAGCTGCCCACACATCTATTACGCCGATCAACTTGAGAGCCT
                      ____________________________________________________________
consensus             CCTCCCGACGATTAAGAACAGCTGCCCACACATCTATTACGCCGATCAACTTGAGAGCCT
 
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rJMSF039M17-          GGTGTCGGAGATAACAAACCCTCCCATGACACAGTCTGTTCACCAACACAGAATATAGTT
JMSF039M17+           GGTGTCGGAGATAACAAACCCTCCCATGACACAGTCTGTTCACCAACACAGAATATAGTT
JMFN029H10+           GGGGTCGGAGATAACGAGCCCTCCCAGGACGCAGTGTGTTCGCCGGCACAGAATATAGTT
rJMFF020F08-          GGTGTCGGAGATAACAAACCCTCCCATGACACAGTCTGTTCACCAACACAGAATATAGTT
JMFF020F08+           GGTGTCGGAGATAACAAACCCTCCCATGACACAGTCTGTTCACCAACACAGAATATAGTT
                      ____________________________________________________________
consensus             GGTGTCGGAGATAACAAACCCTCCCATGACACAGTCTGTTCACCAACACAGAATATAGTT
 
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rJMSF039M17-          TTACCCCT                                                    
JMSF039M17+           TTACCCCT                                                    
JMFN029H10+           TTACCCCTTTTTGATCATCACTGCTTGTTTATTCTCTTTAACTCATCCAGCCCAGAAATG
rJMFF020F08-          TTACCCCTTTTTGATCATCACTGCTTGTTTATTCTCTTTAACTCATCCAGCCCAGAAATC
JMFF020F08+           TTACCCCTTTTTGATCATCACTGCTTGTTTATTCTCTTTAACTCATCCAGCCCAGAAATC
                      ____________________________________________________________
consensus             TTACCCCTTTTTGATCATCACTGCTTGTTTATTCTCTTTAACTCATCCAGCCCAGAAATC
 
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JMFN029H10+           TGACCAGGTTCATATTATTCACTTTATTTCACCCAGAAATCTGGCAAGGTAACGTGAATA
rJMFF020F08-          TGACCAGGTTCATATTATTCACTTTATTTCACCCAGAAATCTGACAAGGTAACTTGAATA
JMFF020F08+           TGACCAGGTTCATATTATTCACTTTATTTCACCCAGAAATCTGACAAGGTAACTTGAATA
                      ____________________________________________________________
consensus             TGACCAGGTTCATATTATTCACTTTATTTCACCCAGAAATCTGACAAGGTAACTTGAATA
 
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JMFN029H10+           ATACCTCGACCGACGCCCGGTGATCCCTGCCTCGTCACTGTGCCGCGGTCCCCCCGACAA
rJMFF020F08-          ATACCTCGACCGACGCCCGGTGATCCCTGCCTCTTCACTGTGCCGCGGTCCCCCCGACAA
JMFF020F08+           ATACCTCGACCGACGCCCGGTGATCCCTGCCTCTTCACTGTGCCGCGGTCCCCCCGACAA
                      ____________________________________________________________
consensus             ATACCTCGACCGACGCCCGGTGATCCCTGCCTCTTCACTGTGCCGCGGTCCCCCCGACAA
 
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JMFN029H10+           CCATCTCTACGTGGGAGTGAAGAACGAACGAACAAAGGAGGCAAGCCGACGAGATTGGCG
rJMFF020F08-          CCATCTCTACGTGGGATTGAAGAACGAACGAACAAAGGAGGCAAGCCGACGAGATTCGCG
JMFF020F08+           CCATCTCTACGTGGGATTGAAGAACGAACGAACAAAGGAGGCAAGCCGACGAGATTCGCG
                      ____________________________________________________________
consensus             CCATCTCTACGTGGGATTGAAGAACGAACGAACAAAGGAGGCAAGCCGACGAGATTCGCG
 
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JMFN029H10+           GAGCTGGTCCACACACTCCGTACGCAC                                 
rJMFF020F08-          GAGCTCGTCCACACACTCCCTACGCACGAACAGCGAACATA                   
JMFF020F08+           GAGCTCGTCCACACACTCCCTACGCACGAACAGCGAACATACGAAAGACTAGAGAAATTC
                      ____________________________________________________________
consensus             GAGCTCGTCCACACACTCCCTACGCACGAACAGCGAACATACGAAAGACTAGAGAAATTC