Contig 007351:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006L08Sequence512007351 (6)dbj|BAO57484.1|2e-105transcription factor InNAP [Ipomoea nil] dbj|BAO57485.1| transcription factor In687007351 (6)dbj|BAO57484.1|3e-118transcription factor InNAP [Ipomoea nil] dbj|BAO57485.1| transcription factor In
JMFF018A19Sequence605007351 (6)dbj|BAO57484.1|6e-104transcription factor InNAP [Ipomoea nil] dbj|BAO57485.1| transcription factor In675007351 (6)dbj|BAO57484.1|2e-110transcription factor InNAP [Ipomoea nil] dbj|BAO57485.1| transcription factor In
JMFS023D11Sequence534007351 (6)dbj|BAO57484.1|1e-89transcription factor InNAP [Ipomoea nil] dbj|BAO57485.1| transcription factor In
JMFS110E05Sequence639007351 (6)dbj|BAO57484.1|2e-117transcription factor InNAP [Ipomoea nil] dbj|BAO57485.1| transcription factor In

Alignment

This contig is upended


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rJMFF018A19-                                        GGCTGATTGCAGCATGACAAATGTATGACA
rJMFF006L08-                                        GGCTGATTGCAGCATGACAAATGTATGACA
                      ____________________________________________________________
consensus                                           GGCTGATTGCAGCATGACAAATGTATGACA
 
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rJMFF018A19-          CTTTCATGTTCATCCAATGCTGAGATATTTTACAATTGCTGGCGGTTATATGTCTGTCTT
rJMFF006L08-          CTTTCATGTTCATCCAATGCTGAGATATTTTACAATTGCTGGCGGTTATATGTCTGTCTT
                      ____________________________________________________________
consensus             CTTTCATGTTCATCCAATGCTGAGATATTTTACAATTGCTGGCGGTTATATGTCTGTCTT
 
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rJMFF018A19-          TCACTTTCATTCTTTGAATAATCGGAATCCCATTCCATTCCTTTTTTGGTTTTTTCCCTT
rJMFF006L08-          TCACTTTCATTCTTTGAATAATCGGAATCCCATTCCATTCCTTTTTTGGTTTTTTCCCTT
                      ____________________________________________________________
consensus             TCACTTTCATTCTTTGAATAATCGGAATCCCATTCCATTCCTTTTTTGGTTTTTTCCCTT
 
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rJMFF018A19-          CTCAATGACGTCACTGGAATTGGAAAGCTGGGTTCACGAAAATGGGCTGGTTGAAGATGC
rJMFF006L08-          CTCAATGACGTCACTGGAATTGGAAAGCTGGGTTCACGAAAATGGGCTGGTTGAAGATGC
                      ____________________________________________________________
consensus             CTCAATGACGTCACTGGAATTGGAAAGCTGGGTTCACGAAAATGGGCTGGTTGAAGATGC
 
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rJMFF018A19-          TATTTTGGGTGTATTGGTGTGGGACTACTTCACCAAGGCCAAAAGGGACAATTCCATTGT
rJMFF006L08-          TATTTTGGGTGTATTGGTGTGGGACTACTTCACCAAGGCCAAAAGGGACAATTCCATTGT
                      ____________________________________________________________
consensus             TATTTTGGGTGTATTGGTGTGGGACTACTTCACCAAGGCCAAAAGGGACAATTCCATTGT
 
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rJMFF018A19-          TATTGGTCATTAGTGTGGGGTTTTGGTTGTCAAATGTTGCTGGGTTATTGTTGTTGTCGC
rJMFF006L08-          TATTGGTCATTAGTGTGGGGTTTTGGTTGTCAAATGTTGCTGGGTTATTGTTGTTGTCGC
                      ____________________________________________________________
consensus             TATTGGTCATTAGTGTGGGGTTTTGGTTGTCAAATGTTGCTGGGTTATTGTTGTTGTCGC
 
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rJMFF018A19-          CTAGGAGTTGTGAAATTGACCCAAAACAATCCATTTCCAGGAGGTGGGTTAATGAGCATG
rJMFF006L08-          CTAGGAGTTGTGAAATTGACCCAAAACAATCCATTTCCAGGAGGTGGGTTAATGAGCATG
                      ____________________________________________________________
consensus             CTAGGAGTTGTGAAATTGACCCAAAACAATCCATTTCCAGGAGGTGGGTTAATGAGCATG
 
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rJMFF018A19-          CCCTTGGCAATTTCATCCCTTGTACTTGTGGTCCACCTTCTGAACAACTTGCAATTTCTG
rJMFF006L08-          CCCTTGGCAATTTCATCCCTTGTACTTGTGGTCCACCTTCTGAACAACTTGCAATTTCTG
                      ____________________________________________________________
consensus             CCCTTGGCAATTTCATCCCTTGTACTTGTGGTCCACCTTCTGAACAACTTGCAATTTCTG
 
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rJMFF018A19-          GGTTTGTCTCTTCCACCTCTGTCTTCATCATCATCATCATCCCCGTATTTGAATTGGCTT
rJMFF006L08-          GGTTTGTCTCTTCCACCTCTGTCTTCATCATCATCATCATCCCCGTATTTGAATTGGCTT
                      ____________________________________________________________
consensus             GGTTTGTCTCTTCCACCTCTGTCTTCATCATCATCATCATCCCCGTATTTGAATTGGCTT
 
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rJMFF018A19-          TCCCCAAGTTTTTCTTCTTGTAAATTCGACATAGAACCCAATCGTCCAGCCTCATGGACC
rJMFF006L08-          TCCCCAAGTTTTTCTTCTTGTAAATTCGACATAGAACCCAATCGTCCAGCCTCATGGACC
JMFF006L08+                                                             CTCATGGACC
JMFS110E05+                  GTTTTTCTTCTTGTAAATTCGACATAGAACCCAATCGTCCAGCCTCATGGACC
JMFF018A19+                                                                 TGGACC
                      ____________________________________________________________
consensus             TCCCCAAGTTTTTCTTCTTGTAAATTCGACATAGAACCCAATCGTCCAGCCTCATGGACC
 
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rJMFF018A19-          CATTTTGCCTGGCGGGTAATGATCTTGATTCGCTAAGGCGATATTCGTGCATGATCCAAT
rJMFF006L08-          CATTTTGCCTGGCGGGTAATGATCTTGATTCGCTAAGGCGATATTCGTGCATGATCCAAT
JMFF006L08+           CATTTTGCCTGGCGGGTAATGATCTTGATTCGCTAAGGCGATATTCGTGCATGATCCAAT
JMFS110E05+           CATTTTGCCTGGCGGGTAATGATCTTGATTCGCTAAGGCGATATTCGTGCATGATCCAAT
JMFS023D11+                                                           GCATGATCCAAT
JMFF018A19+           CATTTTGCCTGGCGGGTAATGATCTTGATTCGCTAAGGCGATATTCGTGCATGATCCAAT
                      ____________________________________________________________
consensus             CATTTTGCCTGGCGGGTAATGATCTTGATTCGCTAAGGCGATATTCGTGCATGATCCAAT
 
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rJMFF018A19-          CAGTCTTGATGCCCTTTGGGTGGCCTGCCCTTGTAAAACACGAGA               
rJMFF006L08-          CAGTCTTGATGCCCTTT-GGTGGCCTGCCCTTGNAAAACACGAGAGCTTTTTTGACAC  
JMFF006L08+           CAGTCTTGATGCCCTTT-GGTGGCCTGCCCTTGTAAAACACGAGAGCTTTTTTGACACCC
JMFS110E05+           CAGTCTTGATGCCCTTT-GGTGGCCTGCCCTTGTAAAACACGAGAGCTTTTTTGACACCC
JMFS023D11+           CAGTCTTGATGCCCTTT-GGTGGCCTGCCCTTGTAAAACACGAGAGCTTTTTTGACACCC
JMFF018A19+           CAGTCTTGATGCCCTTT-GGTGGCCTGCCCTTGTAAAACACGAGAGCTTTTTTGACACCC
                      ____________________________________________________________
consensus             CAGTCTTGATGCCCTTT-GGTGGCCTGCCCTTGTAAAACACGAGAGCTTTTTTGACACCC
 
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JMFF006L08+           ACGTATTTAGAGCCACTATAGATGGCCTTGTCTGTGCCTGTGGCTTTCCAATAACCCGAC
JMFS110E05+           ACGTATTTAGAGCCACTATAGATGGCCTTGTCTGTGCCTGTGGCTTTCCAATAACCCGAC
JMFS023D11+           ACGTATTTAGAGCCACTATAGATGGCCTTGTCTGTGCCTGTGGCTTTCCAATAACCCGAC
JMFF018A19+           ACGTATTTAGAGCCACTATAGATGGCCTTGTCTGTGCCTGTGGCTTTCCAATAACCCGAC
                      ____________________________________________________________
consensus             ACGTATTTAGAGCCACTATAGATGGCCTTGTCTGTGCCTGTGGCTTTCCAATAACCCGAC
 
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JMFF006L08+           ACGGCTGCCCTATTGGGACGAACTCCGTTGGGGTATTTCCGGTCTCGAGGCGTGAAGAAG
JMFS110E05+           ACGGCTGCCCTATTGGGACGAACTCCGTTGGGGTATTTCCGGTCTCGAGGCGTGAAGAAG
JMFS023D11+           ACGGCTGCCCTATTGGGACGAACTCCGTTGGGGTATTTCCGGTCTCGAGGCGTGAAGAAG
JMFF018A19+           ACGGCTGCCCTATTGGGACGAACTCCGTTGGGGTATTTCCGGTCTCGAGGCGTGAAGAAG
                      ____________________________________________________________
consensus             ACGGCTGCCCTATTGGGACGAACTCCGTTGGGGTATTTCCGGTCTCGAGGCGTGAAGAAG
 
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JMFF006L08+           TACCACTCCTTCTCTCCGAATTCTGCTTTCTCAGGCAATTCCCAAGGATCGAACTTGTAA
JMFS110E05+           TACCACTCCTTCTCTCCGAATTCTGCTTTCTCAGGCAATTCCCAAGGATCGAACTTGTAA
JMFS023D11+           TACCACTCCTTCTCTCCGAATTCTGCTTTCTCAGGCAATTCCCAAGGATCGAACTTGTAA
JMFF018A19+           TACCACTCCTTCTCTCCGAATTCTGCTTTCTCAGGCAATTCCCAAGGATCGAACTTGTAA
                      ____________________________________________________________
consensus             TACCACTCCTTCTCTCCGAATTCTGCTTTCTCAGGCAATTCCCAAGGATCGAACTTGTAA
 
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JMFF006L08+           ATATCGACTTCGGGGATAATGGAGACAGGGCACGGCATAGAAGTGGCCTGGTTACGAAGG
JMFS110E05+           ATATCGACTTCGGGGATAATGGAGACAGGGCACGGCATAGAAGTGGCCTGGTTACGAAGG
JMFS023D11+           ATATCGACTTCGGGGATAATGGAGACAGGGCACGGCATAGAAGTGGCCTGGTTACGAAGG
JMFF018A19+           ATATCGACTTCGGGGATAATGGAGACAGGGCACGGCATAGAAGTGGCCTGGTTACGAAGG
                      ____________________________________________________________
consensus             ATATCGACTTCGGGGATAATGGAGACAGGGCACGGCATAGAAGTGGCCTGGTTACGAAGG
 
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JMFF006L08+           TAATACATGATGAGCTCTTCATCCGTAGGGTGAAACCTAAAGCCAGGAGGAAGATCAGAA
JMFS110E05+           TAATACATGATGAGCTCTTCATCCGTAGGGTGAAACCTAAAGCCAGGAGGAAGATCAGAA
JMFS023D11+           TAATACATGATGAGCTCTTCATCCGTAGGGTGAAACCTAAAGCCAGGAGGAAGATCAGAA
JMFF018A19+           TAATACATGATGAGCTCTTCATCCGTAGGGTGAAACCTAAAGCCAGGAGGAAGATCAGAA
                      ____________________________________________________________
consensus             TAATACATGATGAGCTCTTCATCCGTAGGGTGAAACCTAAAGCCAGGAGGAAGATCAGAA
 
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JMFF006L08+           GTTTGTTTGCCGCCCATCATTTTTTGTACGGAAATTAAAGGATCCAAAATATGTATGTGT
JMFS110E05+           GTTTGTTTGCCGCCCATCATTTTTTGTACGGAAATTAAAGGATCCAAAATATGTATGTGT
JMFS023D11+           GTTTGTTTGCCGCCCATCATTTTTTGTACGGAAATTAAAGGATCCAAAATATGTATGTGT
JMFF018A19+           GTTTGTTTGCCGCCCATCATTTTTTGTACGGAAATTAAAGGATCCAAAATATGTATGTGT
                      ____________________________________________________________
consensus             GTTTGTTTGCCGCCCATCATTTTTTGTACGGAAATTAAAGGATCCAAAATATGTATGTGT
 
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JMFF006L08+           TGGCTGTACTAAACTAGATTTGT                                     
JMFS110E05+           TGGCTGTACTAAACTAGATTTGTGTTGGTTTGAGGATATGTTTTGTGGTATATAGGTAAG
JMFS023D11+           TGGCTGTACTAAACTAGATTTGTGTTGGTTTGAGGATATGTTTTGTGGTATATAGGTAAG
JMFF018A19+           TGGCTGTACTAAACTAGATTTGTGTTGGTTTGAGGATATGTTTTGTGGTATATAGGTAAG
                      ____________________________________________________________
consensus             TGGCTGTACTAAACTAGATTTGTGTTGGTTTGAGGATATGTTTTGTGGTATATAGGTAAG
 
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JMFS110E05+           AAAGAGAGAAAGAGAAGGGGAGATGATTGTATAGGAGGAGAAA                 
JMFS023D11+           AAAGAGAGAAAGAGAAGGGGAGATGATTGTATAGGAGGAGAAA                 
JMFF018A19+           AAAGAGAGAAAGAGAAGGGGAGATGATTGTATAGGAGGAGAAAGGAAAATGAGGTGTTTT
                      ____________________________________________________________
consensus             AAAGAGAGAAAGAGAAGGGGAGATGATTGTATAGGAGGAGAAAGGAAAATGAGGTGTTTT