Contig 007349:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017D03Sequence608007349 (4)ref|XP_009599100.1|2e-74PREDICTED: 40S ribosomal protein S17-like [Nicotiana tomentosiformis]631007349 (4)ref|XP_009599100.1|1e-53PREDICTED: 40S ribosomal protein S17-like [Nicotiana tomentosiformis]
JMFF017F07Sequence577007349 (4)ref|XP_009599100.1|1e-74PREDICTED: 40S ribosomal protein S17-like [Nicotiana tomentosiformis]618007349 (4)ref|XP_009599100.1|3e-73PREDICTED: 40S ribosomal protein S17-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF017F07+                                AATCTCTGTCGTCTCCTACAGCAAAACCTTCCCGCCTC
rJMFF017D03+                                AATCTCTGTCGTCTCCTACAGCAAAACCTTCCCGCCTC
JMFF017D03-                                 AATCTCTGTCGTCTCCTACAGCAAAACCTTCCCGCCTC
JMFF017F07-                                 AATCTCTGTCGTCTCCTACAGCAAAACCTTCCCGCCTC
                      ____________________________________________________________
consensus                                   AATCTCTGTCGTCTCCTACAGCAAAACCTTCCCGCCTC
 
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rJMFF017F07+          GCCGGAAACTCTTCGCCGGAGCAGCCATGGGTCGCGTTCGTACCAAGACCGTGAAGAAGT
rJMFF017D03+          GCCGGAAACTCTTCGCCGGAGCAGCCATGGGTCGCGTTCGTACCAAGACCGTGAAGAAGT
JMFF017D03-           GCCGGAAACTCTTCGCCGGAGCAGCCATGGGTCGCGTTCGTACCAAGACCGTGAAGAAGT
JMFF017F07-           GCCGGAAACTCTTCGCCGGAGCAGCCATGGGTCGCGTTCGTACCAAGACCGTGAAGAAGT
                      ____________________________________________________________
consensus             GCCGGAAACTCTTCGCCGGAGCAGCCATGGGTCGCGTTCGTACCAAGACCGTGAAGAAGT
 
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rJMFF017F07+          CGTCGCGCCAAGTCATCGAGCGGTATTACTCGCGCATGACGTTGGANTTCCACA-CCAAC
rJMFF017D03+          CGTCGCGCCAAGTCATCGAGCGGTATTACTCGCGCATGACGTTGGACTTCCACACCCAAC
JMFF017D03-           CGTCGCGCCAAGTCATCGAGCGGTATTACTCGCGCATGACGTTGGACTTCCACA-CCAAC
JMFF017F07-           CGTCGCGCCAAGTCATCGAGCGGTATTACTCGCGCATGACGTTGGACTTCCACA-CCAAC
                      ____________________________________________________________
consensus             CGTCGCGCCAAGTCATCGAGCGGTATTACTCGCGCATGACGTTGGACTTCCACA-CCAAC
 
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rJMFF017F07+          AAGAAGGTGCTGGAAGAGGTGGCCATCATCGCGTCCAAGCGCCTCCGCAACAAGATCGCC
rJMFF017D03+          AAGAAGGTGCTGGAAGAGGTGGCCATCATCGCGTCCAAGCGCCTCCGCAACAAGATCGCC
JMFF017D03-           AAGAAGGTGCTGGAAGAGGTGGCCATCATCGCGTCCAAGCGCCTCCGCAACAAGATCGCC
JMFF017F07-           AAGAAGGTGCTGGAAGAGGTGGCCATCATCGCGTCCAAGCGCCTCCGCAACAAGATCGCC
                      ____________________________________________________________
consensus             AAGAAGGTGCTGGAAGAGGTGGCCATCATCGCGTCCAAGCGCCTCCGCAACAAGATCGCC
 
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rJMFF017F07+          GGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGACCCGTCCGGGGAATCTCTCTC
rJMFF017D03+          GGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGACCCGTCCGGGGAATCTCTCTC
JMFF017D03-           GGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGACCCGTCCGGGGAATCTCTCTC
JMFF017F07-           GGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGACCCGTCCGGGGAATCTCTCTC
                      ____________________________________________________________
consensus             GGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGACCCGTCCGGGGAATCTCTCTC
 
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rJMFF017F07+          AAGCTTCAGGAGGAGGAGAGGGAGCGGCGTATGGACTCCGTCCCCGACGAGTCTGCCATC
rJMFF017D03+          AAGCTTCAGGAGGAGGAGAGGGAGCGGCGTATGGACTCCGTCCCCGACGAGTCTGCCATC
JMFF017D03-           AAGCTTCAGGAGGAGGAGAGGGAGCGGCGTATGGACTCCGTCCCCGACGAGTCTGCCATC
JMFF017F07-           AAGCTTCAGGAGGAGGAGAGGGAGCGGCGTATGGACTCCGTCCCCGACGAGTCTGCCATC
                      ____________________________________________________________
consensus             AAGCTTCAGGAGGAGGAGAGGGAGCGGCGTATGGACTCCGTCCCCGACGAGTCTGCCATC
 
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rJMFF017F07+          AAGGTGGACCGCATCGAGGTCGATCAGGAGACCATTGACCTGCTCGCTGCAATGGGCATG
rJMFF017D03+          AAGGTGGACCGCATCGAGGTCGATCAGGAGACCATTGACCTGCTCGCTGCAATGGGCATG
JMFF017D03-           AAGGTGGACCGCATCGAGGTCGATCAGGAGACCATTGACCTGCTCGCTGCAATGGGCATG
JMFF017F07-           AAGGTGGACCGCATCGAGGTCGATCAGGAGACCATTGACCTGCTCGCTGCAATGGGCATG
                      ____________________________________________________________
consensus             AAGGTGGACCGCATCGAGGTCGATCAGGAGACCATTGACCTGCTCGCTGCAATGGGCATG
 
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rJMFF017F07+          AGCGATCTCCCTGGGGTTGTGCTCAAGGA                               
rJMFF017D03+          AGCGATCTCCCTGGGGTTGTGCTCAAGGA                               
JMFF017D03-           AGCGATCTCCCTGGGGTTGTGCTCAAGGA                               
JMFF017F07-           AGCGATCTCCCTGGGGTTGTGCTCAAGGATGAGCAGCAGTCTGTCATTGCCCCCGCCGCC
                      ____________________________________________________________
consensus             AGCGATCTCCCTGGGGTTGTGCTCAAGGATGAGCAGCAGTCTGTCATTGCCCCCGCCGCC
 
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JMFF017F07-           GTCTACGGCGGCGCCCGCGGTGGCTTTGGAGGAAGACGGTACTGAAAGGAGTCGTAGACT
                      ____________________________________________________________
consensus             GTCTACGGCGGCGCCCGCGGTGGCTTTGGAGGAAGACGGTACTGAAAGGAGTCGTAGACT
 
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JMFF017F07-           TTTCTTCTCTTGACTTTATTATGTTTTTTTTGGAAGATTTTGCAGTTTTGATGGCTTCAG
                      ____________________________________________________________
consensus             TTTCTTCTCTTGACTTTATTATGTTTTTTTTGGAAGATTTTGCAGTTTTGATGGCTTCAG