| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014N11 | Sequence | 541 | 007337 (7) | emb|CDO97271.1| | 1e-30 | unnamed protein product [Coffea canephora] | 758 | 001082 (7) | ref|XP_011088066.1| | 9e-72 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch |
| JMFF030A12 | Sequence | 544 | 007337 (7) | emb|CDO97271.1| | 1e-41 | unnamed protein product [Coffea canephora] | |||||
| JMFF034E04 | Sequence | 525 | 007337 (7) | emb|CDO97271.1| | 3e-38 | unnamed protein product [Coffea canephora] | 707 | 001082 (7) | ref|XP_011088066.1| | 1e-66 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch |
| JMSF004N16 | Sequence | 237 | 007337 (7) | 314 | 001082 (7) | ||||||
| JMSF005I12 | Sequence | 318 | 007337 (7) | ||||||||
| JMSF005J12 | Sequence | 331 | 007337 (7) | ref|XP_009616895.1| | 2e-04 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch | |||||
| JMSF008D08 | Sequence | 304 | 007337 (7) | 794 | 001082 (7) | ref|XP_009759258.1| | 3e-75 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch | |||
This contig is upended
. : . : . : . : . : . :
JMFF030A12+ ATAATACATGC
____________________________________________________________
consensus ATAATACATGC
. : . : . : . : . : . :
JMFF030A12+ TGTAGGACATTTTTGAAGGACGTCTTCCATTCATGCTTGACATAGTCCACATCCCACCAT
JMFF034E04+ TTCCATTCATGCTTGACATAGTCCACATCCCACCAT
JMFF014N11+ T
____________________________________________________________
consensus TGTAGGACATTTTTGAAGGACGTCTTCCATTCATGCTTGACATAGTCCACATCCCACCAT
. : . : . : . : . : . :
JMFF030A12+ TGTTCAGATAATTGTGTCTTGATGATATGCTTTCCTCAGTGACACTTTCAGATTGCCGAT
JMFF034E04+ TGTTCAGATAATTGTGTCTTGATGATATGCTTTCCTCAGTGACACTTTCAGATTGCCGAT
JMFF014N11+ TGTTCAGATAATTGTGTCTTGATGATATGCTTTCCTCAGTGACACTTTCAGATTGCCGAT
____________________________________________________________
consensus TGTTCAGATAATTGTGTCTTGATGATATGCTTTCCTCAGTGACACTTTCAGATTGCCGAT
. : . : . : . : . : . :
JMFF030A12+ GCACATGGCCATCTTCTTTCAGGAACAAATCCATCTGTGATGGAGTAAGGCCATAGAGAG
JMFF034E04+ GCACATGGCCATCTTCTTTCAGGAACAAATCCATCTGTGATGGAGTAAGGCCATAGAGAG
JMFF014N11+ GCACATGGCCATCTTCTTTCAGGAACAAATCCATCTGTGATGGAGTAAGGCCATAGAGAG
____________________________________________________________
consensus GCACATGGCCATCTTCTTTCAGGAACAAATCCATCTGTGATGGAGTAAGGCCATAGAGAG
. : . : . : . : . : . :
JMFF030A12+ TCTGAGGCACATTTTTATAGTTTTCCATCAACCCTTCTTTGAGATTCTCCTCTCGGAATT
JMFF034E04+ TCTGAGGCACATTTTTATAGTTTTCCATCAACCCTTCTTTGAGATTCTCCTCTCGGAATT
JMSF005I12+ TCTCGGAATT
JMSF008D08+ CGGAATT
JMSF005J12+ TTTGAGATTCTCCTCTCGGAATT
JMFF014N11+ TCTGAGGCACATTTTTATAGTTTTCCATCAACCCTTCTTTGAGATTCTCCTCTCGGAATT
____________________________________________________________
consensus TCTGAGGCACATTTTTATAGTTTTCCATCAACCCTTCTTTGAGATTCTCCTCTCGGAATT
. : . : . : . : . : . :
JMFF030A12+ GTTTGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
JMFF034E04+ GTTTGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
JMSF005I12+ GTTTGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
JMSF008D08+ GTTNGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
JMSF005J12+ GTTTGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
JMFF014N11+ GTTTGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
____________________________________________________________
consensus GTTTGGGTATGTGGTCGAGAGACTTAGAAGAAGCTACGGGAGACATGTACGGACATCCTC
. : . : . : . : . : . :
JMFF030A12+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
JMFF034E04+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
JMSF005I12+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
JMSF008D08+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
JMSF004N16+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
JMSF005J12+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
JMFF014N11+ CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
____________________________________________________________
consensus CTCTCACACCATTTTTTGCTCTAGGGCTGCGCCCAGAAGGTGCGAATATGAGGTTTTGGG
. : . : . : . : . : . :
JMFF030A12+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
JMFF034E04+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
JMSF005I12+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
JMSF008D08+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
JMSF004N16+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
JMSF005J12+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
JMFF014N11+ AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
____________________________________________________________
consensus AGGAGAGAAAACTCGATTTGTGGAGGCTTATAGAAGAACACAAGTCGCGGTTGTTCCCGG
. : . : . : . : . : . :
JMFF030A12+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
JMFF034E04+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
JMSF005I12+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
JMSF008D08+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
JMSF004N16+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
JMSF005J12+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
JMFF014N11+ CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
____________________________________________________________
consensus CGGTGGCCGGACCAGGAAGCCGAGAGAGAAGCAGAGAAGAAGACATGGAGTGCAGAGAGT
. : . : . : . : . : . :
JMFF030A12+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACT
JMFF034E04+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGATGGGG
JMSF005I12+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGATGGGG
JMSF008D08+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGAT
JMSF004N16+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGAT
JMSF005J12+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGATGGGG
JMFF014N11+ TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGATGGGG
____________________________________________________________
consensus TTCGCTTTCTATGAAGTCATACACAGAGCGGAGGTTGCTTCCAGAGTTAAACTGATGGGG
. : . : . : . : . : . :
JMFF034E04+ ATTTT
JMSF005I12+ ATTTT
JMSF005J12+ ATTTT
JMFF014N11+ ATTTTGGCTGGCTGGCTGCGATTTCTGTAAAGATTATTGACAGGGACGAAATGCAAACAG
____________________________________________________________
consensus ATTTTGGCTGGCTGGCTGCGATTTCTGTAAAGATTATTGACAGGGACGAAATGCAAACAG