| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004K02 | Sequence | 467 | 007336 (3) | ref|XP_002272112.1| | 2e-16 | PREDICTED: shaggy-related protein kinase theta [Vitis vinifera] emb|CBI38764.3| | 684 | 005460 (3) | ref|XP_006339456.1| | 7e-76 | PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum] |
| JMFF014L24 | Sequence | 278 | 007336 (3) | 757 | 005460 (3) | gb|AAT81407.1| | 1e-93 | shaggy-related protein kinase 6 [Solanum peruvianum] | |||
| JMFF031M02 | Sequence | 560 | 007336 (3) | ref|XP_009610982.1| | 2e-31 | PREDICTED: shaggy-related protein kinase epsilon-like [Nicotiana tomentosiformi | 657 | 005460 (3) | ref|XP_006339456.1| | 5e-30 | PREDICTED: shaggy-related protein kinase theta-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFF031M02+ TACAATTATCTGACCTACTTCAGTCCCGTTA
____________________________________________________________
consensus TACAATTATCTGACCTACTTCAGTCCCGTTA
. : . : . : . : . : . :
JMFF031M02+ CCGCTAACAACAGCGGGCTCAATTTCCTTTAAGTTGGCCTCATGGTTATCAATATTTTCA
____________________________________________________________
consensus CCGCTAACAACAGCGGGCTCAATTTCCTTTAAGTTGGCCTCATGGTTATCAATATTTTCA
. : . : . : . : . : . :
JMFF031M02+ TCTCTAATTTTCATTTCTTTCATTTCTTTGGGAAGCTCATCATAGCCAGATTTTTCGGTT
JMFF004K02+ TTTCTNTCATTTCTTTGGGAAGCTCATCATAGCCAGATTTTTCGGTT
____________________________________________________________
consensus TCTCTAATTTTCATTTCTTTCATTTCTTTGGGAAGCTCATCATAGCCAGATTTTTCGGTT
. : . : . : . : . : . :
JMFF031M02+ CCAGCCACATTTGGCACATCCGTGGTAGTTCCCTGAGATATCGAAGCTGCATCCTGTCTT
JMFF004K02+ CCAGCCACATTTGGCACATCCGTGGTAGTTCCCTGAGATATCGAAGCTGCATCCTGTCTT
____________________________________________________________
consensus CCAGCCACATTTGGCACATCCGTGGTAGTTCCCTGAGATATCGAAGCTGCATCCTGTCTT
. : . : . : . : . : . :
JMFF031M02+ AATGCAGTGGTGGATTCTTCCTTCGGTTCGGGTTCATCCCTAGCCCTCTGATCAACCTCT
JMFF004K02+ AATGCAGTGGTGGATTCTTCCTTCGGTTCGGGTTCATCCCTAGCCCTCTGATCAACCTCT
____________________________________________________________
consensus AATGCAGTGGTGGATTCTTCCTTCGGTTCGGGTTCATCCCTAGCCCTCTGATCAACCTCT
. : . : . : . : . : . :
JMFF031M02+ TGCTCAACCTTCGCCCTCTTAATGTTGGAATCCCCTCCAGGATCAGAAACGGAAGAACGG
JMFF004K02+ TGCTCAACCTTCGCCCTCTTAATGTTGGAATCCCCTCCAGGATCAGAAACGGAAGAACGG
JMFF014L24+ TGTTGGAATCCCCTCCAGGATCAGAAACGGAAGANCGG
____________________________________________________________
consensus TGCTCAACCTTCGCCCTCTTAATGTTGGAATCCCCTCCAGGATCAGAAACGGAAGAACGG
. : . : . : . : . : . :
JMFF031M02+ CCGGAAGTAATGCTCTTGAGGCGACGCATCATATTCATATTTTATTTTTTCCGATTTCAA
JMFF004K02+ CCGGAAGTAATGCTCTTGAGGCGACGCATCATATTCATATTTTATTTTTTCCGATTTCAA
JMFF014L24+ CCGGAAGTAATGCTCTTGAGGCGACGCATCATATTCATATTTTATTTTTTCCGATTTCAA
____________________________________________________________
consensus CCGGAAGTAATGCTCTTGAGGCGACGCATCATATTCATATTTTATTTTTTCCGATTTCAA
. : . : . : . : . : . :
JMFF031M02+ ACGGCGGATGCCCAAATCCTTTCCCCCCTCTCTTTCCCTAACCCTCAACTGTTAGAGGAT
JMFF004K02+ ACGGCGGATGCCCAAATCCTTTCCCCCCTCTCTTTCCCTAACCCTCAACTGTTAGAGGAT
JMFF014L24+ ACGGCGGATGCCCAAATCCTTTCCCCCCTCTCTTTCCCTAACCCTCAACTGTTAGAGGAT
____________________________________________________________
consensus ACGGCGGATGCCCAAATCCTTTCCCCCCTCTCTTTCCCTAACCCTCAACTGTTAGAGGAT
. : . : . : . : . : . :
JMFF031M02+ TGAAGATTGAAGATCAGAAAAATTGGAGAAAGAGAAAGAGAAAGGAAAGAATGAATGGAA
JMFF004K02+ TGAAGATTGAAGATCAGAAAAATTGGAGAAAGAGAAAGAGAAAGGAAAGAATGAATGGAA
JMFF014L24+ TGAAGATTGAAGATCAGAAAAATTGGAGAAAGAGAAAGAGAAAGGAAAGAATGAATGGAA
____________________________________________________________
consensus TGAAGATTGAAGATCAGAAAAATTGGAGAAAGAGAAAGAGAAAGGAAAGAATGAATGGAA
. : . : . : . : . : . :
JMFF031M02+ TGGGGAGGCCTTCTCTCCCTCTCGCTTCTAGCTGCGTTCAACAATATAC
JMFF004K02+ TGGGGAGGCCTTCTCTCCCTCTCGCTTCTAGCTGCGTTCAACAATATACAGCGAAGAGAG
JMFF014L24+ TGGGGAGGCCTTCTCTCCCTCTCGCTTCTAGCTGCGTTCAACAATATACAGCGAAGAGAG
____________________________________________________________
consensus TGGGGAGGCCTTCTCTCCCTCTCGCTTCTAGCTGCGTTCAACAATATACAGCGAAGAGAG