| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014L12 | Sequence | 566 | 007335 (5) | ref|XP_009369580.1| | 1e-39 | PREDICTED: probable inactive receptor-like protein kinase At3g56050 [Pyrus x br | 673 | 011448 (2) | emb|CBI15912.3| | 4e-79 | unnamed protein product [Vitis vinifera] |
| JMFF042K12 | Sequence | 665 | 007335 (5) | ref|XP_002278392.1| | 2e-55 | PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Vi | |||||
| JMFS107A02 | Sequence | 620 | 007335 (5) | ref|XP_009369580.1| | 2e-59 | PREDICTED: probable inactive receptor-like protein kinase At3g56050 [Pyrus x br | |||||
| JMSF004M04 | Sequence | 296 | 007335 (5) | ||||||||
| JMSF052P20 | Sequence | 660 | 007335 (5) | ref|XP_002278392.1| | 2e-55 | PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 [Vi | 760 | 011448 (2) | emb|CBI15912.3| | 4e-80 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFS107A02+ TCCAACAAAAGGATTGACAAGGAG
JMSF052P20+ CAAGGAG
JMFF042K12+ CAAGGAG
____________________________________________________________
consensus TCCAACAAAAGGATTGACAAGGAG
. : . : . : . : . : . :
JMFS107A02+ AAGTTATTGCCAAGATCTATGGGAAATTGGCCACTGAAGTTATTATGCCCCAAATCCAAC
JMSF052P20+ AAGTTATTGCCAAGATCTATGGGAAATTGGCCACTGAAGTTATTATGCCCCAAATCCAAC
JMFF042K12+ AAGTTATTGCCAAGATCTATGGGAAATTGGCCACTGAAGTTATTATGCCCCAAATCCAAC
____________________________________________________________
consensus AAGTTATTGCCAAGATCTATGGGAAATTGGCCACTGAAGTTATTATGCCCCAAATCCAAC
. : . : . : . : . : . :
JMFS107A02+ ACTTCCAGTGCCCTCAGTTCTCCAATATCTTTTGGAATGATTCCAGTAAATGAATTGTTG
JMSF052P20+ ACTTCCAGTGCCCTCAGTTCTCCAATATCTTTTGGAATGATTCCAGTAAATGAATTGTTG
JMFF042K12+ ACTTCCAGTGCCCTCAGTTCTCCAATATCTTTTGGAATGATTCCAGTAAATGAATTGTTG
JMFF014L12+ GAATGATTCCAGTAAATGAATTGTTG
____________________________________________________________
consensus ACTTCCAGTGCCCTCAGTTCTCCAATATCTTTTGGAATGATTCCAGTAAATGAATTGTTG
. : . : . : . : . : . :
JMFS107A02+ CGTAAAATTATGACTTGAATATATGTGAGCTTTGAAAGCTCAGGTGCCAAAGTTCCTCCA
JMSF052P20+ CGTAAAATTATGACTTGAATATATGTGAGCTTTGAAAGCTCAGGTGCCAAAGTTCCTCCA
JMFF042K12+ CGTAAAATTATGACTTGAATATATGTGAGCTTTGAAAGCTCAGGTGCCAAAGTTCCTCCA
JMFF014L12+ CGTAAAATTATGACTTGAATATATGTGAGCTTTGAAAGCTCAGGTGCCAAAGTTCCTCCA
____________________________________________________________
consensus CGTAAAATTATGACTTGAATATATGTGAGCTTTGAAAGCTCAGGTGCCAAAGTTCCTCCA
. : . : . : . : . : . :
JMFS107A02+ AGCTGAAGATCTCTCAAATTTAACGTTACAACTTTCCCATCCGAACATTCAACCCCAAAC
JMSF052P20+ AGCTGAAGATCTCTCAAATTTAACGTTACAACTTTCCCATCCGAACATTCAACCCCAAAC
JMFF042K12+ AGCTGAAGATCTCTCAAATTTAACGTTACAACTTTCCCATCCGAACATTCAACCCCAAAC
JMFF014L12+ AGCTGAAGATCTCTCAAATTTAACGTTACAACTTTCCCATCCGAACATTCAACCCCAAAC
____________________________________________________________
consensus AGCTGAAGATCTCTCAAATTTAACGTTACAACTTTCCCATCCGAACATTCAACCCCAAAC
. : . : . : . : . : . :
JMFS107A02+ CAGCAACATGGATTCAAATCCCCATCGCCATTATACTTCCAGCTTGAAAGCGCACCAAAC
JMSF052P20+ CAGCAACATGGATTCAAATCCCCATCGCCATTATACTTCCAGCTTGAAAGCGCACCAAAC
JMFF042K12+ CAGCAACATGGATTCAAATCCCCATCGCCATTATACTTCCAGCTTGAAAGCGCACCAAAC
JMFF014L12+ CAGCAACATGGATTCAAATCCCCATCGCCATTATACTTCCAGCTTGAAAGCGCACCAAAC
____________________________________________________________
consensus CAGCAACATGGATTCAAATCCCCATCGCCATTATACTTCCAGCTTGAAAGCGCACCAAAC
. : . : . : . : . : . :
JMFS107A02+ GGATCTTCAATCACTCTTTCCTTAAACCTCAACAGCGCCAATCCTTCGCTGTTGGGCGAC
JMSF052P20+ GGATCTTCAATCACTCTTTCCTTAAACCTCAACAGCGCCAATCCTTCGCTGTTGGGCGAC
JMFF042K12+ GGATCTTCAATCACCCTTTCCTTAAACCTCAACAGCGCCAATCCTTCGCTGTTGGGCGAC
JMFF014L12+ GGATCTTCAATCACTCTTTCCTTAAACCTCAACAGCGCCAATCCTTCGCTGTTGGGCGAC
____________________________________________________________
consensus GGATCTTCAATCACTCTTTCCTTAAACCTCAACAGCGCCAATCCTTCGCTGTTGGGCGAC
. : . : . : . : . : . :
JMFS107A02+ CAACACAAACCCAGATTATGATGAAAAACGCAGAACAGTACAAACGTTGTTGCTAAACGA
JMSF052P20+ CAACACAAACCCAGATTATGATGAAAAACGCAGAACAGTACAAACGTTGTTGCTAAACGA
JMFF042K12+ CAACACAAACCCAGATTATGATGAAAAACGCAGAACAGTACAAACGTTGTTGCTAAACGA
JMFF014L12+ CAACACAAACCCAGATTATGATGAAAAACGCAGAACAGTACAAACGTTGTTGCTAAACGA
____________________________________________________________
consensus CAACACAAACCCAGATTATGATGAAAAACGCAGAACAGTACAAACGTTGTTGCTAAACGA
. : . : . : . : . : . :
JMFS107A02+ AGCTCGAAACAGCTCATCCATCTCCGTTTTACATCCATTTTCTTACCATAACAGCACAAA
JMSF052P20+ AGCTCGAAACAGCTCATCCATCTCCGTTTTACATCCATTTTCTTACCATAACAGCACAAA
JMFF042K12+ AGCTCGAAACAGCTCATCCATCTCCGTTTTACATCCATTTTCTTACCACAACAGCACAAA
JMFF014L12+ AGCTCGAAACAGCTCATCCATCTCCGTTTTACATCCATTTTCTTACCATAACAGCACAAA
____________________________________________________________
consensus AGCTCGAAACAGCTCATCCATCTCCGTTTTACATCCATTTTCTTACCATAACAGCACAAA
. : . : . : . : . : . :
JMFS107A02+ TTCAAACGAA
JMSF052P20+ TTCAAACGAA---TGGAAGGTGGCGAGGAGAGATAAAATATTTAGAGGTGAATGCAAGTG
JMFF042K12+ TTCAAACGAACAGTGGAAGGTGGCGAGGAGAGATAAAATATTTAGAGGTGAATGCAAGTG
JMSF004M04+ TGGAAGGTGGCGAGGAGAGATAAAATATTTAGAGGTGAATGCAAGTG
JMFF014L12+ TTCAAACGAACAGTGGAAGGTGGCGAGGAGAGATAAAATATTTAGAGGTGAATGCAAGTG
____________________________________________________________
consensus TTCAAACGAACAGTGGAAGGTGGCGAGGAGAGATAAAATATTTAGAGGTGAATGCAAGTG
. : . : . : . : . : . :
JMSF052P20+ GGCGATGAATTAATCGGCGATGAGAGTGGAAGAGAAGCTTGAGAATCGGTGGGATTTTTG
JMFF042K12+ GGCGATGAATTAATCGGCGATGAGAGTGGAAGAGAAGCTTGAGAATCGGTGGGATTTTTG
JMSF004M04+ GGCGATGAATTAATCGGCGATGAGAGTGGAAGAGAAGCTTGAGAATCGGTGGGATTTTTG
JMFF014L12+ GGCGATGAATTAATCGGCGATGAGAGTGGAAGAGAAGCTTGAGAATCGGTGGGATTTTTG
____________________________________________________________
consensus GGCGATGAATTAATCGGCGATGAGAGTGGAAGAGAAGCTTGAGAATCGGTGGGATTTTTG
. : . : . : . : . : . :
JMSF052P20+ TTTGAATATCATTGGACGCAGTGGCAGCTCCCCTGTCTCCATGGATAC
JMFF042K12+ TTTGAATATCATTGGACGCAGTGGCAGCTCCCCTGTCTCCATGGATAC
JMSF004M04+ TTTGAATATCATTGGACGCAGTGGCAGCTCCCCTGTCTCCATGGATACATC
JMFF014L12+ TTTGAATATCATTGGACGCAGTGGCAGCTCCCCTGTCTCCATGGATACATCTCTCTGACT
____________________________________________________________
consensus TTTGAATATCATTGGACGCAGTGGCAGCTCCCCTGTCTCCATGGATACATCTCTCTGACT