Contig 007334:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014G23Sequence451007334 (5)322008357 (4)
JMFF035C05Sequence542007334 (5)ref|XP_009605872.1|4e-10PREDICTED: GATA transcription factor 5 [Nicotiana tomentosiformis]308008357 (4)
JMFF045K03Sequence521007334 (5)ref|XP_009605872.1|4e-14PREDICTED: GATA transcription factor 5 [Nicotiana tomentosiformis]582008357 (4)ref|XP_006340696.1|4e-45PREDICTED: GATA transcription factor 5-like [Solanum tuberosum]
JMFF046F20Sequence435007334 (5)402008357 (4)
JMFS051B01Sequence612007334 (5)ref|XP_009761911.1|7e-19PREDICTED: GATA transcription factor 5 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS051B01+                                   GCTGGGATTGTCTCGGACCGGAATTTCGGCCTGAAC
                      ____________________________________________________________
consensus                                     GCTGGGATTGTCTCGGACCGGAATTTCGGCCTGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+                             AAGCGGCGGCAGCTTCCGGGCGGGGTATGTTAGAGAGTAGCC
JMFS051B01+           CCGGTTCTTGTTTTCCGGAAGCGGCGGCAGCTNTCCGGCGGGGTATGTTAGAGAGTAGCC
JMFF035C05+                                                 CGGGGTATGTTAGAGAGTAGCC
                      ____________________________________________________________
consensus             CCGGTTCTTGTTTTCCGGAAGCGGCGGCAGCTTTCGGGCGGGGTATGTTAGAGAGTAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           GGAAAAGGAGTCTTCTTCCACGAAATGCGACAGCCATTCAAGGCTATCCAAATCATCCGC
JMFS051B01+           GGAAAAGGAGTCTTCTTCCACGAAATGCGACAGCCATTCAAGGCTATCCAAATCATCCGC
JMFF035C05+           GGAAAAGGAGTCTTNTTCCACGAAATGCGACAGCCATTCAAGGCTATCCAAATCATCCGC
                      ____________________________________________________________
consensus             GGAAAAGGAGTCTTCTTCCACGAAATGCGACAGCCATTCAAGGCTATCCAAATCATCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           CGGAGCATTGAGCCCGCCGCCGGGAAAACAAGAAAAATC-TTCTTCAATACAAAAATTAA
JMFS051B01+           CGGAGCATTGAGCCCGCCGCCGGGAAAACAAGAAAAATC-TTCTTCAATACAAAAATTAA
JMFF035C05+           CGGAGCATTGAGCCCGCCGCCGGGAAAACAAGAAAAATCTTTCTTCAATACAAAAATTAA
JMFF046F20+                                                        CAATACAAAAATTAA
JMFF014G23+                                                      TTCAATACAAAAATTAA
                      ____________________________________________________________
consensus             CGGAGCATTGAGCCCGCCGCCGGGAAAACAAGAAAAATC-TTCTTCAATACAAAAATTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           CGCCCACCGCTTCTTCTTGCCGCTTTTCCGGCATAACAGAGACAAACACCAAAGACCCAG
JMFS051B01+           CGCCCACCGCTTCTTCTTGCCGCTTTTCCGGCATAACAGAGACAAACACCAAAGACCCAG
JMFF035C05+           CGCCCACCGCTTCTTCTTGCCGCTTTTCCGGCATAACAGAGACAAACACCAAAGACCCAG
JMFF046F20+           CGCCCACCGCTTCTTCTTGCCGCTTTTCCGGCATAACAGAGACAAACACCAAAGACCCAG
JMFF014G23+           CGCCCACCGCTTNTTCTTGCCGCTTTTCCGGCATAACAGAGACAAACACCAAAGACCCAG
                      ____________________________________________________________
consensus             CGCCCACCGCTTCTTCTTGCCGCTTTTCCGGCATAACAGAGACAAACACCAAAGACCCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           AATTTCCTCCACCCTTCTCCTCCGGCACCTCTGTTTTCTCCTTCTCCTCGTACTCCTCGG
JMFS051B01+           AATTTCCTCCACCCTTCTCCTCCGGCACCTCTGTTTTCTCCTTCTCCTCGTACTCCTCGG
JMFF035C05+           AATTTCCTCCACCCTTCTCCTCCGGCACCTCTGTTTTCTCCTTCTCCTCGTACTCCTCGG
JMFF046F20+           AATTTCCTCCACCCTTCTCCTCCGGCACCTCTGTTTTCTCCTTCTCCTCGTACTCCTCGG
JMFF014G23+           AATTTCCTCCACCCTTCTCCTCCGGCACCTCTGTTTTCTCCTTCTCCTCGTACTCCTCGG
                      ____________________________________________________________
consensus             AATTTCCTCCACCCTTCTCCTCCGGCACCTCTGTTTTCTCCTTCTCCTCGTACTCCTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           AAAACCCATTCGACAAGTCGAGGAGGTCGTCAACGAAGAAATCGTCGCCGCCGCCCCCTT
JMFS051B01+           AAAACCCATTCGACAAGTCGAGGAGGTCGTCAACGAAGAAATCGTCGCCGCCGCCCCCTT
JMFF035C05+           AAAACCCATTCGACAAGTCGAGGAGGTCGTCAACGAAGAAATCGTCGCCGCCGCCCCCTT
JMFF046F20+           AAAACCCATTCGACAAGTCGAGGAGGTCGTCAACGAAGAAATCGTCGCCGCCGCCCCCTT
JMFF014G23+           AAAACCCATTCGACAAGTCGAGGAGGTCGTCAACGAAGAAATCGTCGCCGCCGCCCCCTT
                      ____________________________________________________________
consensus             AAAACCCATTCGACAAGTCGAGGAGGTCGTCAACGAAGAAATCGTCGCCGCCGCCCCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           GACAGCTCCCCACCGCCGGCAACTCATTTTCCAAACACCCCAGCGGGTGGGCCGTCTTCG
JMFS051B01+           GACAGCTCCCCACCGCCGGCAACTCATTTTCCAAACACCCCAGCGGGTGGGCCGTCTTCG
JMFF035C05+           GACAGCTCCCCACCGCCGGCAACTCATTTTCCAAACACCCCAGCGGGTGGGCCGTCTTCG
JMFF046F20+           GACAGCTCCCCACCGCCGGCAACTCATTTTCCAAACACCCCAGCGGGTGGGCCGTCTTCG
JMFF014G23+           GACAGCTCCCCACCGCCGGCAACTCATTTTCCAAACACCCCAGCGGGTGGGCCGTCTTCG
                      ____________________________________________________________
consensus             GACAGCTCCCCACCGCCGGCAACTCATTTTCCAAACACCCCAGCGGGTGGGCCGTCTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           CCGCCATCTCCGGCCTAACAGAGCTCTTCAACGCGCACTCCATTCCCTGAACAGACACGG
JMFS051B01+           CCGCCATCTCCGGCCTAACAGAGCTCTTCAACGCGCACTCCATTCCCTGAACAGACACGG
JMFF035C05+           CCGCCATCTCCGGCCTAACAGAGCTCTTCAACGCGCACTCCATTCCCTGAACAGACACGG
JMFF046F20+           CCGCCATCTCCGGCCTAACAGAGCTCTTCAACGCGCACTCCATTCCCTGAACAGACACGG
JMFF014G23+           CCGCCATCTCCGGCCTAACAGAGCTCTTCAACGCGCACTCCATTCCCTGAACAGACACGG
                      ____________________________________________________________
consensus             CCGCCATCTCCGGCCTAACAGAGCTCTTCAACGCGCACTCCATTCCCTGAACAGACACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF045K03+           CGGAGGACGGCGGCGGAGTTAGGGATAGGGCGGAGGAGGAGAAGGTAAAAGGGT      
JMFS051B01+           CGGAGGACGGCGGCGGAGTTAGGGATAGGGCGGAGGAGGAGAAGGTAAAAGGGTTGAGAA
JMFF035C05+           CGGAGGACGGCGGCGGAGTTAGGGATAGGGCGGAGGAGGAGAAGGTAAAAGGGTTGAGAA
JMFF046F20+           CGGAGGACGGCGGCGGAGTTAGGGATAGGGCGGAGGAGGAGAAGGTAAAAGGGTTGAGAA
JMFF014G23+           CGGAGGACGGCGGCGGAGTTAGGGATAGGGCGGAGGAGGAGAAGGTAAAAGGGTTGAGAA
                      ____________________________________________________________
consensus             CGGAGGACGGCGGCGGAGTTAGGGATAGGGCGGAGGAGGAGAAGGTAAAAGGGTTGAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS051B01+           AAGAGTGGTGTTGAGTTCGGTAAAGCATTGAATGA                         
JMFF035C05+           AAGAGTGGTGTTGAGTTCGGTAAAGCATTGAATGA                         
JMFF046F20+           AAGAGTGGTGTTGAGTTCGGTAAAGCATTGAATGAGAGATAGATAGATAGAGAGACTCCC
JMFF014G23+           AAGAGTGGTGTTGAGTTCGGTAAAGCATTGAATGAGAGATAGATAGATAGAGAGACTCCC
                      ____________________________________________________________
consensus             AAGAGTGGTGTTGAGTTCGGTAAAGCATTGAATGAGAGATAGATAGATAGAGAGACTCCC