| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012I08 | Sequence | 510 | 007323 (4) | ref|XP_009766632.1| | 9e-17 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Nicotiana sy | |||||
| JMFF031H20 | Sequence | 575 | 007323 (4) | ref|XP_006354937.1| | 4e-18 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum tube | 701 | 014876 | ref|XP_010320362.1| | 1e-13 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum lyco |
| JMFF033A01 | Sequence | 591 | 007323 (4) | ref|XP_006354937.1| | 1e-21 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum tube | 729 | 002623 (3) | emb|CDP07604.1| | 3e-74 | unnamed protein product [Coffea canephora] |
| JMSF051N22 | Sequence | 621 | 007323 (4) | ref|XP_006354937.1| | 3e-23 | PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Solanum tube | 683 | 002623 (3) | emb|CDP07604.1| | 3e-69 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF051N22+ GGAGATGAAACCGACGAGGACT
____________________________________________________________
consensus GGAGATGAAACCGACGAGGACT
. : . : . : . : . : . :
JMFF033A01+ CGAAATCAATCCAACAACCAGCGGGGACGTCGAATTCCCGCCGAGAATCTCAT
JMSF051N22+ TCATCAGCGAAATCAATCCAACAACCAGCGGGGACGTCGAATTCCCGCCGAGAATCTCAT
JMFF031H20+ CAGCGGGGACGTCGAATTCCCGCCGAGAATCTCAT
____________________________________________________________
consensus TCATCAGCGAAATCAATCCAACAACCAGCGGGGACGTCGAATTCCCGCCGAGAATCTCAT
. : . : . : . : . : . :
JMFF033A01+ CCGCGAGCGTCGAGTACATCGACGCCCTAGCCGGCGACGAGTAAGGGCCAGCGGGCTTGG
JMSF051N22+ CCGCGAGCGTCGAGTACATCGACGCCCTAGCCGGCGACGAGTAAGGGCCAGCGGGCTTGG
JMFF031H20+ CCGCGAGCGTCGAGTACATCGACGCCCTAGCCGGCGACGAGTAAGGGCCAGCGGGCTTGG
JMFF012I08+ CCGGCGACGAGTAAGGGCCAGCGGGCTTGG
____________________________________________________________
consensus CCGCGAGCGTCGAGTACATCGACGCCCTAGCCGGCGACGAGTAAGGGCCAGCGGGCTTGG
. : . : . : . : . : . :
JMFF033A01+ GCCGTCGGAAATCGGAGGAGGGCTTGGAATCGGGTTTCTGGAAGAAGCGGGAACGGGCGG
JMSF051N22+ GCCGTCGGAAATCGGAGGAGGGCTTGGAATCGGGTTTCTGGAAGAAGCGGGAACGGGCGG
JMFF031H20+ GCCGTCGGAAATCGGAGGAGGGCTTGGAATCGGGTTTCTGGAAGAAGCGGGAACGGGCGG
JMFF012I08+ GCCGTCGGAAATCGGAGGAGGGCTTGGAATCGGGTTTCTGGAAGAAGCGGGAACGGGCGG
____________________________________________________________
consensus GCCGTCGGAAATCGGAGGAGGGCTTGGAATCGGGTTTCTGGAAGAAGCGGGAACGGGCGG
. : . : . : . : . : . :
JMFF033A01+ AGCAGCACTCATGGAAGAATCGGCAGCTGCCCACCTTGGAGGAAGCCGAAGACGCAATGT
JMSF051N22+ AGCAGCACTCATGGAAGAATCGGCAGCTGCCCACCTTGGAGGAAGCCGAAGACGCAATGT
JMFF031H20+ AGCAGCACTCATGGAAGAATCGGCAGCTGCCCACCTTGGAGGAAGCCGAAGACGCAATGT
JMFF012I08+ AGCAGCACTCATGGAAGAATCGGCAGCTGCCCACCTTGGAGGAAGCCGAAGACGCAATGT
____________________________________________________________
consensus AGCAGCACTCATGGAAGAATCGGCAGCTGCCCACCTTGGAGGAAGCCGAAGACGCAATGT
. : . : . : . : . : . :
JMFF033A01+ TTTGGGCTAAGTAGCCGGAGTAAGTAACGGTGAACCGGATCGCCATAACAACTAATTGTA
JMSF051N22+ TTTGGGCTAAGTAGCCGGAGTAAGTAACGGTGAACCGGATCGCCATAACAACTAATTGTA
JMFF031H20+ TTTGGGCTAAGTAGCCGGAGTAAGTAACGGTGAACCGGATCGCCATAACAACTAATTGTA
JMFF012I08+ TTTGGGCTAAGTAGCCGGAGTAAGTAACGGTGAACCGGATCGCCATAACAACTAATTGTA
____________________________________________________________
consensus TTTGGGCTAAGTAGCCGGAGTAAGTAACGGTGAACCGGATCGCCATAACAACTAATTGTA
. : . : . : . : . : . :
JMFF033A01+ AGAAGCTCAGAAACAAATAAAAAATAGTGGGTTCGAAGAGTAACGGTGAGGAGACTACAG
JMSF051N22+ AGAAGCTCAGAAACAAATAAAAAATAGTGGGTTCGAAGAGTAACGGTGAGGAGACTACAG
JMFF031H20+ AGAAGCTCAGAAACAAATAAAAAATAGTGGGTTCGAAGAGTAACGGTGAGGAGACTACAG
JMFF012I08+ AGAAGCTCAGAAACAAATAAAAAATAGTGGGTTCGAAGAGTAACGGTGAGGAGACTACAG
____________________________________________________________
consensus AGAAGCTCAGAAACAAATAAAAAATAGTGGGTTCGAAGAGTAACGGTGAGGAGACTACAG
. : . : . : . : . : . :
JMFF033A01+ AGAACCCTAAAAGAAGCCGAGAAATTGCATTGTAATCGACGAAATCAGTGAGCTTGAATC
JMSF051N22+ AGAACCCTAAAAGAAGCCGAGAAATTGCATTGTAATCGACGAAATCAGTGAGCTTGAATC
JMFF031H20+ AGAACCCTAAAAGAAGCCGAGAAATTGCATTGTAATCGACGAAATCAGTGAGCTTGAATC
JMFF012I08+ AGAACCCTAAAAGAAGCCGAGAAATTGCATTGTAATCGACGAAATCAGTGAGCTTGAATC
____________________________________________________________
consensus AGAACCCTAAAAGAAGCCGAGAAATTGCATTGTAATCGACGAAATCAGTGAGCTTGAATC
. : . : . : . : . : . :
JMFF033A01+ CGCAACGATGAATTGAAAGGTTAGATCAAACGCCTGGAAAGAAAAACCGGAATCAATTCC
JMSF051N22+ CGCAACGATGAATTGAAAGGTTAGATCAAACGCCTGGAAAGAAAAACCGGAATCAATTCC
JMFF031H20+ CGCAACGATGAATTGAAAGGTTAGATCAAACGCCTGGAAAGAAAAACCGGAATCAATTCC
JMFF012I08+ CGCAACGATGAATTGAAAGGTTAGATCAAACGCCTGGAAAGAAAAACCGGAATCAATTCC
____________________________________________________________
consensus CGCAACGATGAATTGAAAGGTTAGATCAAACGCCTGGAAAGAAAAACCGGAATCAATTCC
. : . : . : . : . : . :
JMFF033A01+ ACCAAATCGGACGGGAATCTCAAAGTCAAACTCTCGGAGATGGTGGCGTTGACTAGATAT
JMSF051N22+ ACCAAATCGGACGGGAATCTCAAAGTCAAACTCTCGGAGATGGTGGCGTTGACTAGATAT
JMFF031H20+ ACCAAATCGGACGGGAATCTCAAAGTCAAACTCTCGGAGATGGTGGCGTTGACTAGATAT
JMFF012I08+ ACCAAATCGGACGGGAATCTCAAAGTCAAACTCTCGGAGATGGTGGCGTTGACTAGATAT
____________________________________________________________
consensus ACCAAATCGGACGGGAATCTCAAAGTCAAACTCTCGGAGATGGTGGCGTTGACTAGATAT
. : . : . : . : . : . :
JMFF033A01+ CTCCCAGAGGAGAAACTCCGGGAGGGAGAAGCAGAGGTTCAGTTGCAGAGTTGGTGAC
JMSF051N22+ CTCCCAGAGGAGAAACTCCGGGAGGGAGAAGCAGAGGTTCAGTTGCAGAGTTGGTGAC
JMFF031H20+ CTCCCAGAGGAGAAACTCCGGGAGGGAGAAGCAGAGGTTCAGTTGCAGAGTTGGTGAC
JMFF012I08+ CTCCCAGAGGAGAAACTCCGGGAGGGAGAAGCAGAGGTTCAGTTGCAGAGTTGGTGACGC
____________________________________________________________
consensus CTCCCAGAGGAGAAACTCCGGGAGGGAGAAGCAGAGGTTCAGTTGCAGAGTTGGTGACGC