Contig 007317:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L21Sequence578007317 (2)ref|XP_009804164.1|2e-70PREDICTED: WUSCHEL-related homeobox 1 [Nicotiana sylvestris]635002538 (2)ref|XP_006341531.1|1e-08PREDICTED: WUSCHEL-related homeobox 1-like [Solanum tuberosum]
JMFF017N22Sequence580007317 (2)ref|XP_009804164.1|2e-70PREDICTED: WUSCHEL-related homeobox 1 [Nicotiana sylvestris]279002538 (2)

Alignment

This contig is upended


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JMFF017N22+                               TCTCTGCAATAAGTGTACTAGGGGATGGCCAATTCTTGGT
JMFF010L21+                                 TCTGCAATAAGTGTACTAGGGGATGGCCAATTCTTGGT
                      ____________________________________________________________
consensus                                 TCTCTGCAATAAGTGTACTAGGGGATGGCCAATTCTTGGT
 
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JMFF017N22+           GAGTTGTTGATCGGCTTCAAAACCTGTCCTATTTGCCCCTGATTCTTTTCTTTCTGTGTT
JMFF010L21+           GAGTTGTTGATCGGCTTCAAAACCTGTCCTATTTGCCCCTGATTCTTTTCTTTCTGTGTT
                      ____________________________________________________________
consensus             GAGTTGTTGATCGGCTTCAAAACCTGTCCTATTTGCCCCTGATTCTTTTCTTTCTGTGTT
 
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JMFF017N22+           TTCCATGCAATTAGTGTTGTTAACGTTTGGGTGGTCATTATCGGTGGCGGCGCCACCAGC
JMFF010L21+           TTCCATGCAATTAGTGTTGTTAACGTTTGGGTGGTCATTATCGGTGGCGGCGCCACCAGC
                      ____________________________________________________________
consensus             TTCCATGCAATTAGTGTTGTTAACGTTTGGGTGGTCATTATCGGTGGCGGCGCCACCAGC
 
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JMFF017N22+           TGCGGCGGACTCGAGTTGGCGGCGGCGTTTTTGGCGCTCCCGCGCTTTGTGATTCTGAAA
JMFF010L21+           TGCGGCGGACTCGAGTTGGCGGCGGCGTTTTTGGCGCTCCCGCGCTTTGTGATTCTGAAA
                      ____________________________________________________________
consensus             TGCGGCGGACTCGAGTTGGCGGCGGCGTTTTTGGCGCTCCCGCGCTTTGTGATTCTGAAA
 
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JMFF017N22+           CCAGTAAAACACGTTCTTCCCTTCTATCTTCCCGTACTTGCGGAGCTGCGCGGTGATGTG
JMFF010L21+           CCAGTAAAACACGTTCTTCCCTTCTATCTTCCCGTACTTGCGGAGCTGCGCGGTGATGTG
                      ____________________________________________________________
consensus             CCAGTAAAACACGTTCTTCCCTTCTATCTTCCCGTACTTGCGGAGCTGCGCGGTGATGTG
 
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JMFF017N22+           TTGGATTTGATCGGCGGACGGCGTTCTCGTTCCCCGCCGGTACAACTCCTCCAGGGTCTG
JMFF010L21+           TTGGATTTGATCGGCGGACGGCGTTCTCGTTCCCCGCCGGTACAACTCCTCCAGGGTCTG
                      ____________________________________________________________
consensus             TTGGATTTGATCGGCGGACGGCGTTCTCGTTCCCCGCCGGTACAACTCCTCCAGGGTCTG
 
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JMFF017N22+           TAGCTGCTCCGGCGTCGGATTCCACCTCGAGCTCACCACAACTTGGTGCGTATTGAATTC
JMFF010L21+           TAGCTGCTCCGGCGTCGGATTCCACCTCGAGCTCACCACAACTTGGTGCGTATTGAATTC
                      ____________________________________________________________
consensus             TAGCTGCTCCGGCGTCGGATTCCACCTCGAGCTCACCACAACTTGGTGCGTATTGAATTC
 
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JMFF017N22+           CCGCTTGCTTTGCTCCGCCGCCATAGCAAGATGGTGATTAAACGCGACGAAATCATTTCC
JMFF010L21+           CCGCTTGCTTTGCTCCGCCGCCATAGCAAGATGGTGATTAAACGCGACGAAATCATTTCC
                      ____________________________________________________________
consensus             CCGCTTGCTTTGCTCCGCCGCCATAGCAAGATGGTGATTAAACGCGACGAAATCATTTCC
 
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JMFF017N22+           ATGGATGCGGCCTAAAGCGCAAGAAGGATTGGGAGAGGCGGCGGAGGAAGTGAGAGGACG
JMFF010L21+           ATGGATGCGGCCTAAAGCGCAAGAAGGATTGGGAGAGGCGGCGGAGGAAGTGAGAGGACG
                      ____________________________________________________________
consensus             ATGGATGCGGCCTAAAGCGCAAGAAGGATTGGGAGAGGCGGCGGAGGAAGTGAGAGGACG
 
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JMFF017N22+           GGGCATGAGGGGGCGGAGGCGGCGGCTGTTGAAGGATTCCGGCATGCTGAAATCTCAACT
JMFF010L21+           GGGCATGAGGGGGCGGAGGCGGCGGCTGTTGAAGGATTCCGGCATGCTGAAATCTCAACT
                      ____________________________________________________________
consensus             GGGCATGAGGGGGCGGAGGCGGCGGCTGTTGAAGGATTCCGGCATGCTGAAATCTCAACT