clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF009F14 | Sequence | 555 | 007310 (3) | ref|XP_009774840.1| | 8e-30 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves | 679 | 008164 (3) | ref|XP_009776396.1| | 1e-100 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves |
JMFF037F03 | Sequence | 573 | 007310 (3) | ref|XP_009774840.1| | 5e-32 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves | 729 | 008164 (3) | ref|XP_009776396.1| | 1e-112 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves |
JMSF015M04 | Sequence | 527 | 007310 (3) | ref|XP_009595898.1| | 2e-22 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana toment | 743 | 008164 (3) | ref|XP_009776396.1| | 2e-118 | PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves |
This contig is upended
. : . : . : . : . : . :
JMFF037F03+ GAACTGAGTACCCTTCACTTTAATTTTAGCCCATAAG
JMSF015M04+ CCCATAAG
JMFF009F14+ CCCATAAG
____________________________________________________________
consensus GAACTGAGTACCCTTCACTTTAATTTTAGCCCATAAG
. : . : . : . : . : . :
JMFF037F03+ CTCATGGCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
JMSF015M04+ CTCATGCCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
JMFF009F14+ CTCATGGCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
____________________________________________________________
consensus CTCATGGCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
. : . : . : . : . : . :
JMFF037F03+ GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
JMSF015M04+ GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
JMFF009F14+ GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
____________________________________________________________
consensus GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
. : . : . : . : . : . :
JMFF037F03+ AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
JMSF015M04+ AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
JMFF009F14+ AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
____________________________________________________________
consensus AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
. : . : . : . : . : . :
JMFF037F03+ CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTAC----CGTTGTTACTCATTAG
JMSF015M04+ CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTACCTGTCGTTGTTACTCATTAG
JMFF009F14+ CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTAC----CGTTGTTACTCATTAG
____________________________________________________________
consensus CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTAC----CGTTGTTACTCATTAG
. : . : . : . : . : . :
JMFF037F03+ ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
JMSF015M04+ ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
JMFF009F14+ ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
____________________________________________________________
consensus ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
. : . : . : . : . : . :
JMFF037F03+ GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
JMSF015M04+ GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
JMFF009F14+ GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
____________________________________________________________
consensus GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
. : . : . : . : . : . :
JMFF037F03+ GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
JMSF015M04+ GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
JMFF009F14+ GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
____________________________________________________________
consensus GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
. : . : . : . : . : . :
JMFF037F03+ GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
JMSF015M04+ GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
JMFF009F14+ GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
____________________________________________________________
consensus GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
. : . : . : . : . : . :
JMFF037F03+ CTCCAAATTCAGAATGTAATACTACTTCCCAGTTCCCATTTCGGAGAAGAGAGTTTAATT
JMSF015M04+ CTCCAAATTCAGAATGTAATACTACTTCCC
JMFF009F14+ CTCCAAATTCAGAATGTAATACTACTTCCCAGTTCCCATTTCGGAGAAGAGAGTTTAATT
____________________________________________________________
consensus CTCCAAATTCAGAATGTAATACTACTTCCCAGTTCCCATTTCGGAGAAGAGAGTTTAATT