Contig 007310:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009F14Sequence555007310 (3)ref|XP_009774840.1|8e-30PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves679008164 (3)ref|XP_009776396.1|1e-100PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves
JMFF037F03Sequence573007310 (3)ref|XP_009774840.1|5e-32PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana sylves729008164 (3)ref|XP_009776396.1|1e-112PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves
JMSF015M04Sequence527007310 (3)ref|XP_009595898.1|2e-22PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Nicotiana toment743008164 (3)ref|XP_009776396.1|2e-118PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X2 [Nicotiana sylves

Alignment

This contig is upended


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JMFF037F03+                                  GAACTGAGTACCCTTCACTTTAATTTTAGCCCATAAG
JMSF015M04+                                                               CCCATAAG
JMFF009F14+                                                               CCCATAAG
                      ____________________________________________________________
consensus                                    GAACTGAGTACCCTTCACTTTAATTTTAGCCCATAAG
 
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JMFF037F03+           CTCATGGCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
JMSF015M04+           CTCATGCCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
JMFF009F14+           CTCATGGCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
                      ____________________________________________________________
consensus             CTCATGGCATTGTTACATTGATAGTCTCCAAATTTGGGATTGTTGCAAATAGCCATCATT
 
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JMFF037F03+           GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
JMSF015M04+           GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
JMFF009F14+           GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
                      ____________________________________________________________
consensus             GGTTGTACATCCGATTCATCAGGAAACGTTGCTCTAAGAGATTCTTCAAATAATTTTGCT
 
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JMFF037F03+           AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
JMSF015M04+           AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
JMFF009F14+           AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
                      ____________________________________________________________
consensus             AATTGCTCTTTAACACTCCCCACAGCTGTCATGGTTGAAATCGGTGTTGCTGTTACTTTC
 
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JMFF037F03+           CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTAC----CGTTGTTACTCATTAG
JMSF015M04+           CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTACCTGTCGTTGTTACTCATTAG
JMFF009F14+           CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTAC----CGTTGTTACTCATTAG
                      ____________________________________________________________
consensus             CCCACACTACGAAATCTACTAGATGTAGATCTGAGTGTAC----CGTTGTTACTCATTAG
 
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JMFF037F03+           ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
JMSF015M04+           ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
JMFF009F14+           ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
                      ____________________________________________________________
consensus             ATTTTCTAGGCTGGAGGCTTTGACGATTTGATGGTGGCCATTGAGTAGCATACCGGCGGA
 
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JMFF037F03+           GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
JMSF015M04+           GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
JMFF009F14+           GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
                      ____________________________________________________________
consensus             GCGCTCACATGTGGAAGAAATATAGGGTTTCCGGGAGCGATTGAGCGACGATAGGACGAA
 
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JMFF037F03+           GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
JMSF015M04+           GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
JMFF009F14+           GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
                      ____________________________________________________________
consensus             GGTGCAGACGACACTCGAGATGACAGAGAGCCGGAGATGGAGTCAGAGGAGTGAGAGGCG
 
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JMFF037F03+           GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
JMSF015M04+           GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
JMFF009F14+           GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
                      ____________________________________________________________
consensus             GAGAGCCGGAACAGGGATGGGTTTAGGGTTTAGGCGAAGCTCCCTCTCCGATTCTTTTGG
 
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JMFF037F03+           CTCCAAATTCAGAATGTAATACTACTTCCCAGTTCCCATTTCGGAGAAGAGAGTTTAATT
JMSF015M04+           CTCCAAATTCAGAATGTAATACTACTTCCC                              
JMFF009F14+           CTCCAAATTCAGAATGTAATACTACTTCCCAGTTCCCATTTCGGAGAAGAGAGTTTAATT
                      ____________________________________________________________
consensus             CTCCAAATTCAGAATGTAATACTACTTCCCAGTTCCCATTTCGGAGAAGAGAGTTTAATT