| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009F11 | Sequence | 200 | 007309 (7) | 167 | 007309 (7) | ||||||
| JMFF014P15 | Sequence | 556 | 005253 (6) | ref|XP_009616503.1| | 1e-102 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 809 | 007309 (7) | ref|XP_008810807.1| | 2e-78 | PREDICTED: chaperonin CPN60-2, mitochondrial [Phoenix dactylifera] |
| JMFF017P15 | Sequence | 556 | 005253 (6) | ref|XP_009616503.1| | 7e-103 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 810 | 007309 (7) | gb|KHG09712.1| | 1e-105 | Chaperonin CPN60-2, mitochondrial [Gossypium arboreum] |
| JMFF024P16 | Sequence | 532 | 005253 (6) | ref|XP_009616503.1| | 4e-97 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 752 | 007309 (7) | gb|KHG09712.1| | 2e-90 | Chaperonin CPN60-2, mitochondrial [Gossypium arboreum] |
| JMSF013H02 | Sequence | 240 | 005253 (6) | ref|XP_009616503.1| | 2e-25 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 737 | 007309 (7) | gb|KHG09712.1| | 5e-96 | Chaperonin CPN60-2, mitochondrial [Gossypium arboreum] |
| JMSF041P16 | Sequence | 722 | 005253 (6) | ref|XP_009616503.1| | 3e-112 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis] | 588 | 007309 (7) | ref|XP_010264000.1| | 1e-53 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF013H02+ GGCTGTAT
rJMFF017P15+ AGGAGAAGTTGCAAGAAAGATTAGCAAAGCTTTCTGGTGGTGTGGCTGTAT
rJMFF014P15+ GGAGAAGTTGCAAGAAAGATTAGCAAAGCTTTCTGGTGGTGTGGCTGTAT
____________________________________________________________
consensus AGGAGAAGTTGCAAGAAAGATTAGCAAAGCTTTCTGGTGGTGTGGCTGTAT
. : . : . : . : . : . :
rJMFF024P16+ CCAGTGAAGCCGAGGTTGGTGAGAAGAAAGATAGAGTTACCGATG
rJMSF013H02+ TAAAGATCGGAGGTGCCAGTGAAGCCGAGGTTGGTGAGAAGAAAGATAGAGTTACCGATG
rJMFF017P15+ TAAAGGTCGGAGGTGCCAGTGAAGCCGAGGTTGGTGAGAAGAAAGATAGAGTTACCGATG
rJMFF014P15+ TAAAGATCGGAGGTGCCAGTGAAGCCGAGGTTGGTGAGAAGAAAGATAGAGTTACCGATG
____________________________________________________________
consensus TAAAGATCGGAGGTGCCAGTGAAGCCGAGGTTGGTGAGAAGAAAGATAGAGTTACCGATG
. : . : . : . : . : . :
rJMFF024P16+ CATTAAATGCCACAAAAGCTGCTGTTGAGGAAGGAATTGTCCCTGGCGGTGGTGTTGCAC
rJMSF013H02+ CATTAAATGCCACAAAAGCTGCTGTTGAGGAAGGAATTGTCCCTGGCGGTGGTGTTGCAC
rJMFF017P15+ CATTAAATGCCACAAAAGCTGCTGTTGAGGAAGGAATTGTCCCTGGCGGTGGTGTTGCAC
rJMFF014P15+ CATTAAATGCCACAAAAGCTGCTGTTGAGGAAGGAATTGTCCCTGGCGGTGGTGTTGCAC
____________________________________________________________
consensus CATTAAATGCCACAAAAGCTGCTGTTGAGGAAGGAATTGTCCCTGGCGGTGGTGTTGCAC
. : . : . : . : . : . :
rJMSF041P16+ GAAGATTG
rJMFF024P16+ TTCTCTATGCATCAAAAGAATTGGATAAGTTGCCCACAGCCAACTTTGATCAGAAGATTG
rJMSF013H02+ TTCTCTATGCATCAAAAGAATTGGATAAGTTGCCCACAGCCAACTTTGATCAGAAGATTG
rJMFF017P15+ TTCTCTATGCATCAAAAGAATTGGATAAGTTGCCCACAGCCAACTTTGATCAGAAGATTG
rJMFF014P15+ TTCTCTATGCAT-AAAAGAATTGGATAAGTTGCCCACAGCCAACTTTGATCAGAAGATTG
____________________________________________________________
consensus TTCTCTATGCATCAAAAGAATTGGATAAGTTGCCCACAGCCAACTTTGATCAGAAGATTG
. : . : . : . : . : . :
rJMSF041P16+ GTGTTCAAGTTATTCAGAATGCCCTTAAGACGCCAGTTTACACAATTGCCTCTAATGCTG
rJMFF024P16+ GTGTTCAAGTTATTCAGAATGCCCTTAAGACGCCAGTTTACACAATTGCCTCTAATGCTG
rJMSF013H02+ GTGTTCAAGTTATTCAGAATGCCCTTAAGACGCCAGTTTACACAATTGCCTCTAATGCTG
rJMFF017P15+ GTGTTCAAGTTATTCAGAATGCCCTTAAGACGCCAGTTTACACAATTGCCTCTAATGCTG
rJMFF014P15+ GTGTTCAAGTTATTCAGAATGCCCTTAAGACGCCAGTTTACACAATTGCCTCTAATGCTG
____________________________________________________________
consensus GTGTTCAAGTTATTCAGAATGCCCTTAAGACGCCAGTTTACACAATTGCCTCTAATGCTG
. : . : . : . : . : . :
rJMSF041P16+ GAGTAGAAGGTGCTGTTGTTGTGGGTAAGCTATTGGAGCAAGATAACCCCGATCTCGGAT
rJMFF024P16+ GAGTAGAAGGTGCTGTTGTTGTGGGTAAGCTATTGGAGCAAGATAACCCCGATCTCGGAT
rJMSF013H02+ GAGTAGAAGGTGCTGTTGTTGTGGGTAAGCTATTGGAGCAAGATAACCCCGATCTCGGAT
rJMFF017P15+ GAGTAGAAGGTGCTGTTGTTGTGGGTAAGCTATTGGAGCAAGATAACCCCGATCTCGGAT
rJMFF014P15+ GAGTAGAAGGTGCTGTTGTTGTGGGTAAGCTATTGGAGCAAGATAACCCCGATCTCGGAT
____________________________________________________________
consensus GAGTAGAAGGTGCTGTTGTTGTGGGTAAGCTATTGGAGCAAGATAACCCCGATCTCGGAT
. : . : . : . : . : . :
rJMSF041P16+ ATGATGCAGCAAAAGGTGAATATGTGGATATGGTGAAAGCTGGCATTATTGACCCATTGA
rJMFF024P16+ ATGATGCAGCAAAAGGTGAATATGTGGATATGGTGAAAGCTGGCATTATTGACCCATTGA
rJMSF013H02+ ATGATGCAGCAAAAGGTGAATATGTGGATATGGTGAAAGCTGGCATTATTGACCCATTGA
rJMFF017P15+ ATGATGCAGCAAAAGGTGAATATGTGGATATGGTGAAAGCTGGCATTATTGACCCATTGA
rJMFF014P15+ ATGATGCAGCAAAAGGTGAATATGTGGATATGGTGAAAGCTGGCATTATTGACCCATTGA
____________________________________________________________
consensus ATGATGCAGCAAAAGGTGAATATGTGGATATGGTGAAAGCTGGCATTATTGACCCATTGA
. : . : . : . : . : . :
rJMSF041P16+ AAGTTATAAGAACAGCCTTGGTTGATGCTGCCAGCGTGTCTTCCCTCCTGACAACCACAG
rJMFF024P16+ AAGTTATAAGAACAGCCTTGGTTGATGCTGCCAGCGTGTCTTCCCTCCTGACAACCACAG
rJMSF013H02+ AAGTTATAAGAACAGCCTTGGTTGATGCTGCCAGCGTGTCTTCCCTCCTGACAACCACAG
rJMFF017P15+ AAGTTATAAGAACAGCCTTGGTTGATGCTGCCAGCGTGTCTTCCCTCCTGACAACCACAG
rJMFF014P15+ AAGTTATAAGAACAGCCTTGGTTGATGCTGCCAGCGTGTCTTCCCTCCTGACAACCACAG
____________________________________________________________
consensus AAGTTATAAGAACAGCCTTGGTTGATGCTGCCAGCGTGTCTTCCCTCCTGACAACCACAG
. : . : . : . : . : . :
rJMSF041P16+ AAGCTGTGATCGTCGAGCTTCCCAAGGAGGAGAAGGAAACGCCCGCCATGGGTGGTGGAA
rJMFF024P16+ AAGCTGTGATCGTCGAGCTTCCCAAGGAGGAGAAGGAAACGCCCGCCATGGGTGGTGGAA
rJMSF013H02+ AAGCTGTGATCGTCGAGCTTCCCAAGGAGGAGAAGGAAACGCCCGCCATGGGTGGTGGAA
rJMFF017P15+ AAGCTGTGATCGTCGAGCTTCCCAAGGAGGAGAAGGAAACGCCCGCCATGGGTGGTGGAA
rJMFF014P15+ AAGCTGTGATCGTCGAGCTTCCCAAGGAGGAGAAGGAAACGCCCGCCATGGGTGGTGGAA
____________________________________________________________
consensus AAGCTGTGATCGTCGAGCTTCCCAAGGAGGAGAAGGAAACGCCCGCCATGGGTGGTGGAA
. : . : . : . : . : . :
rJMSF041P16+ TGGGCGGAATGGACTATTGATAGATAACCTCCCTCCCTCCTTCCCTCCAGTCTCCAGAAC
rJMFF024P16+ TGGGCGGAATGGACTATTGATAGATAACCTCCCTCCCTCCTTCCCTCCAGTCTCCAGAAC
rJMSF013H02+ TGGGCGGAATGGACTATTGATAGATAACCTCCCTCCCTCCTTCCCTCCAGTCTCCAGAAC
rJMFF017P15+ TGGGCGGAATGGACTATTGATAGATAACCTCCCTCCCTCCTTCCCTCCAGTCTCCAGAAC
rJMFF014P15+ TGGGCGGAATGGGCTATTGATAGATAACCTCCCTCCCTCCTTCCCTCCAGTCTCCAGAAC
____________________________________________________________
consensus TGGGCGGAATGGACTATTGATAGATAACCTCCCTCCCTCCTTCCCTCCAGTCTCCAGAAC
. : . : . : . : . : . :
rJMSF041P16+ GCAACATTTATAACTCCCCGGCATCTGCATATACATACAGCTCGCACTAAATAAGAGACA
rJMFF024P16+ GCAACATTTATAACTCCCCGGCATCTGCATATACATACAGCTCGCACTAAATAAGAGACA
rJMSF013H02+ GCAACATTTATAACTCCCCGGCATCTGCATATACATACAGCTCGCACTAAATAAGAGACA
rJMFF017P15+ GCAACATTTATAACTCCCCGGCATCTGCATATACATACAGCTCGCACTAAATAAGAGACA
rJMFF014P15+ GCAACATTTATAACTCCCCGGCATCTGCATATACATACAGCTCGCACTAAATAAGAGACA
rJMFF009F11+ CTCGCACTAAATAAGAGACA
JMFF009F11- CTCGCACTAAATAAGAGACA
____________________________________________________________
consensus GCAACATTTATAACTCCCCGGCATCTGCATATACATACAGCTCGCACTAAATAAGAGACA
. : . : . : . : . : . :
rJMSF041P16+ CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
rJMFF024P16+ CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
rJMSF013H02+ CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
rJMFF017P15+ CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
rJMFF014P15+ CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
rJMFF009F11+ CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
JMFF009F11- CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
____________________________________________________________
consensus CATTTTGTTTGTGTGTTGAAAGGGAGCACATTCACTGTATTTTTATCAGAGGCTCAGAAA
. : . : . : . : . : . :
rJMSF041P16+ TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
rJMFF024P16+ TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
rJMSF013H02+ TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTT
rJMFF017P15+ TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
rJMFF014P15+ TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
rJMFF009F11+ TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
JMFF009F11- TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
____________________________________________________________
consensus TGAATTCATGGTTTTGTAGGACACCAAGGAAATTGTAGTAATTTAGTACTTTGTTTTCTC
. : . : . : . : . : . :
rJMSF041P16+ AAGAGACACATTT
rJMFF024P16+ AAGAGACACATTTTGTTTCCCCTAATTTA
rJMFF017P15+ AAGAGACACATTTTGTTTCCCCTAATTTAATGTTATACA
rJMFF014P15+ AAGAGACACATTTTGTTTCCCCTAATTTAATGTTATACA
rJMFF009F11+ AAGAGACACATTTTGTTTCCCCTAATT
JMFF009F11- AAGAGACACATTTTGTTTCCCCTAATTTAATGTTATACATCCTTTGTTTCAAAAAAAAAA
____________________________________________________________
consensus AAGAGACACATTTTGTTTCCCCTAATTTAATGTTATACATCCTTTGTTTCAAAAAAAAAA