Contig 007305:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009C01Sequence612007305 (4)ref|XP_011096601.1|1e-35PREDICTED: F-box protein At4g18380-like [Sesamum indicum]688008163 (4)gb|EYU33385.1|8e-16hypothetical protein MIMGU_mgv1a008110mg [Erythranthe guttata]
JMFF010D17Sequence271007305 (4)ref|XP_011085237.1|8e-06PREDICTED: F-box protein At4g18380-like [Sesamum indicum]691008163 (4)ref|XP_006355407.1|2e-42PREDICTED: F-box protein At5g46170-like [Solanum tuberosum]
JMFF022H09Sequence452007305 (4)gb|EYU33385.1|3e-22hypothetical protein MIMGU_mgv1a008110mg [Erythranthe guttata]699008163 (4)ref|XP_006355407.1|2e-43PREDICTED: F-box protein At5g46170-like [Solanum tuberosum]
JMSF051B08Sequence693007305 (4)ref|XP_011096601.1|5e-41PREDICTED: F-box protein At4g18380-like [Sesamum indicum]797008163 (4)ref|XP_006355407.1|4e-59PREDICTED: F-box protein At5g46170-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF051B08+                                                               GCTCGGCA
                      ____________________________________________________________
consensus                                                                 GCTCGGCA
 
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JMSF051B08+           GCTCGATGCGGAGGAGCTTGATTTCGTTAAAATCTTCAAGACCTGAGTGGGGGAGTGGTG
                      ____________________________________________________________
consensus             GCTCGATGCGGAGGAGCTTGATTTCGTTAAAATCTTCAAGACCTGAGTGGGGGAGTGGTG
 
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JMSF051B08+           GGTCACGGAGCTCTGGTCAAACTCGCCGTCTTCGAGCGCCGACGACGCGGCGACGCGCCT
JMFF009C01+                                                           GGCGACGCGCCT
                      ____________________________________________________________
consensus             GGTCACGGAGCTCTGGTCAAACTCGCCGTCTTCGAGCGCCGACGACGCGGCGACGCGCCT
 
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JMSF051B08+           CGGGGAGGCGGAGATGAATTGGGAGAGAGACTGGAAAGGCTTGAGCAGGCCCGTGAACAC
JMFF009C01+           CGGGGAGGCGGAGATGAATTGGGAGAGAGACTGGAAAGGCTTGAGCAGGCCCGTGAACAC
                      ____________________________________________________________
consensus             CGGGGAGGCGGAGATGAATTGGGAGAGAGACTGGAAAGGCTTGAGCAGGCCCGTGAACAC
 
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JMSF051B08+           GAGGCGGAGGATGGAGGAGATGGGGTGCCGAGACTTGTCAGACGCGGCCGCCGCCGCCGC
JMFF009C01+           GAGGCGGAGGATGGAGGAGATGGGGTGCCGAGACTTGTCAGACGCGGCCGCCGCCGCCGC
                      ____________________________________________________________
consensus             GAGGCGGAGGATGGAGGAGATGGGGTGCCGAGACTTGTCAGACGCGGCCGCCGCCGCCGC
 
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JMSF051B08+           GGCCGACGACGACGGTGAAGAACCGTCTTCGTCGGAGATAACGCAGTCAACCCGAACGAC
JMFF022H09+                                       TCGTCGGAGATAACGCAGTCAACCCGAACGAC
JMFF009C01+           GGCCGACGACGACGGTGAAGAACCGTCTTCGTCGGAGATAACGCAGTCAACCCGAACGAC
                      ____________________________________________________________
consensus             GGCCGACGACGACGGTGAAGAACCGTCTTCGTCGGAGATAACGCAGTCAACCCGAACGAC
 
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JMSF051B08+           GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
JMFF022H09+           GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
JMFF009C01+           GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
                      ____________________________________________________________
consensus             GACGTTGTCAACCTGGGGCACGAGCGAATGGAAACGCTTGGAAACGACGCAGCATCGGCC
 
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JMSF051B08+           GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
JMFF022H09+           GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
JMFF010D17+                                           CGAGCAGGATGAGAGAATCCGGCAGCCG
JMFF009C01+           GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
                      ____________________________________________________________
consensus             GAGAGCTTTGACATCGCCGATCATATTGAAGACGAGCAGGATGAGAGAATCCGGCAGCCG
 
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JMSF051B08+           GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
JMFF022H09+           GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
JMFF010D17+           GTNGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
JMFF009C01+           GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
                      ____________________________________________________________
consensus             GTCGAAGTGGTCCACCGGCTCCGGGTACACTCTGCAACTCAGATCTGGCCTTACAGAACC
 
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JMSF051B08+           CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
JMFF022H09+           CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
JMFF010D17+           CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
JMFF009C01+           CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
                      ____________________________________________________________
consensus             CATATCCCAACAATTTCAAGCTATATATGTATGTATCTCCACAAAGACACCCAGAAAACG
 
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JMSF051B08+           ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
JMFF022H09+           ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
JMFF010D17+           ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
JMFF009C01+           ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
                      ____________________________________________________________
consensus             ATATATAACTATGAATAAACGCAAGAACGGAGAATTGAGAGAATCCGGTAGGATTGGGAT
 
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JMSF051B08+           TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
JMFF022H09+           TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
JMFF010D17+           NTGAAGAAATGGGCTTTATGGATNTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
JMFF009C01+           TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
                      ____________________________________________________________
consensus             TTGAAGAAATGGGCTTTATGGATCTAATAGAGAAGAAATAGACATGGCAGGGGCAGATTT
 
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JMSF051B08+           TAGAGAGAGAGAGGTGTGAAGTCT                                    
JMFF022H09+           TAGAGAGAGAGAGGTGTGAAGTCTGGAGATGAAAACACAGTTCTTGCAGTGATAAAGTAT
JMFF009C01+           TAGAGAGAGAGAGGTGTGAAGTCTGGAGATGAAAACACAGTTCTTGCAGTGATAAAGTAT
                      ____________________________________________________________
consensus             TAGAGAGAGAGAGGTGTGAAGTCTGGAGATGAAAACACAGTTCTTGCAGTGATAAAGTAT