| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008I24 | Sequence | 589 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 3e-44 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags | 785 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 3e-80 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags |
| JMSF045E21 | Sequence | 659 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 3e-81 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags | 819 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 8e-80 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags |
| JMSF048G10 | Sequence | 661 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 3e-51 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags | 760 | 023643 | sp|Q6JJ61.1|RK9_IPOTF | 1e-46 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags |
| JMSF053C01 | Sequence | 658 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 2e-76 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags | 883 | 007303 (7) | sp|Q6JJ61.1|RK9_IPOTF | 2e-79 | RecName: Full=50S ribosomal protein L9, chloroplastic; AltName: Full=CL9; Flags |
This contig is upended
. : . : . : . : . : . :
rJMSF045E21- CAT
____________________________________________________________
consensus CAT
. : . : . : . : . : . :
rJMFF008I24- TTTTAATTTAACATAAGATTGTAATAAACACATTGATACAAAGCACCAAATGATGCAA
rJMSF045E21- ATTTTTAATTTAACATAAGATTGTAATAAACACATTGATACAAAGCACCAAATGATGCAA
rJMSF053C01- TTTTTATTTAACATAAGATTGTAATAAACACATTGATACAAAGCACCAAATGATGCAA
____________________________________________________________
consensus ATTTTTAATTTAACATAAGATTGTAATAAACACATTGATACAAAGCACCAAATGATGCAA
. : . : . : . : . : . :
rJMFF008I24- ATTCATAAAAATCAGTTAATTCTTTTACAATTACAAATTAAAAACACTTACTTTAAGGTA
rJMSF045E21- ATTCATAAAAATCAGTTAATTCTTTTACAATTACAAATTAAAAACACTTACTTTAAGGTA
rJMSF053C01- ATTCATAAAAATCAGTTAATTCTTTTACAATTACAAATTAAAAACACTTACTTTAAGGTA
____________________________________________________________
consensus ATTCATAAAAATCAGTTAATTCTTTTACAATTACAAATTAAAAACACTTACTTTAAGGTA
. : . : . : . : . : . :
rJMFF008I24- GCTTAACCTCATATTTAGCCATGAAGTCTCCTCCTTCCCTTGACAAAACAGTGCAAGAAG
rJMSF045E21- GCTTAACCTCATATTTAGCCATGAAGTCTCCTCCTTCCCTTGACAAAACAGTGCAAGAAG
rJMSF053C01- GCTTAACCTCATATTTAGCCATGAAGTCTCCTCCTTCCCTTGACAAAACAGTGCAAGAAG
____________________________________________________________
consensus GCTTAACCTCATATTTAGCCATGAAGTCTCCTCCTTCCCTTGACAAAACAGTGCAAGAAG
. : . : . : . : . : . :
rJMFF008I24- AAAATCCATAAATTAGTATAAACCGCTCCAGCAAGTCTCTGCCCTTCAATTTGCAGACAC
rJMSF045E21- AAAATCCATAAATTAGTATAAACCGCTCCAGCAAGTCTCTGCCCTTCAATTTGCAGACAC
rJMSF053C01- AAAATCCATAAATTAGTATAAACCGCTCCAGCAAGTCTCTGCCCTTCAATTTGCAGACAC
JMSF045E21+ CTTCAATTTGCAGACAC
____________________________________________________________
consensus AAAATCCATAAATTAGTATAAACCGCTCCAGCAAGTCTCTGCCCTTCAATTTGCAGACAC
. : . : . : . : . : . :
rJMFF008I24- GATCACTTGAACTCGCGCAGTAACTTCTGGATGAAGCTTCAGTTCAGCAGTATATGCTCC
rJMSF045E21- GATCACTTGAACTCGCGCAGTAACTTCTGGATGAAGCTTCAGTTCAGCAGTATATGCTCC
rJMSF053C01- GATCACTTGAACTCGCGCAGTAACTTCTGGATGAAGCTTCAGTTCAGCAGTATATGCTCC
JMSF053C01+ TGAACTCGCGCAGTAACTTCTGGATGAAGCTTCAGTTCAGCAGTATATGCTCC
JMSF045E21+ GATCACTTGAACTCGCGCAGTAACTTCTGGATGAAGCTTCAGTTCAGCAGTATATGCTCC
____________________________________________________________
consensus GATCACTTGAACTCGCGCAGTAACTTCTGGATGAAGCTTCAGTTCAGCAGTATATGCTCC
. : . : . : . : . : . :
rJMFF008I24- AGTTTCACGAATCTCGGGCAGAGATACTATTCTTTTGTCCACTTCCCTCTGTAGCTGTGC
rJMSF045E21- AGTTTCACGAATCTCGGGCAGAGATACTATTCTTTTGTCCACTTCCCTCTGTAGCTGTGC
JMSF048G10+ CCTCTGTAGCTGTGC
rJMSF053C01- AGTTTCACGAATCTCGGGCAGAGATACTATTCTTTTGTCCACTTCCCTCTGTAGCTGTGC
JMSF053C01+ AGTTTCACGAATCTCGGGCAGAGATACTATTCTTTTGTCCACTTCCCTCTGTAGCTGTGC
JMSF045E21+ AGTTTCACGAATCTCGGGCAGAGATACTATTCTTTTGTCCACTTCCCTCTGTAGCTGTGC
____________________________________________________________
consensus AGTTTCACGAATCTCGGGCAGAGATACTATTCTTTTGTCCACTTCCCTCTGTAGCTGTGC
. : . : . : . : . : . :
rJMFF008I24- CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
rJMSF045E21- CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
JMSF048G10+ CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
rJMSF053C01- CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
JMSF053C01+ CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
JMSF045E21+ CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
JMFF008I24+ CAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
____________________________________________________________
consensus CTTGATTATGTCAACAAGATCCTGGGCAGTGACACTTCCAAATATTTGTTTTCCTTTCCC
. : . : . : . : . : . :
rJMFF008I24- GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
rJMSF045E21- GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
JMSF048G10+ GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
rJMSF053C01- GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
JMSF053C01+ GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
JMSF045E21+ GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
JMFF008I24+ GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
____________________________________________________________
consensus GCCCTTGCGTTTCACCTTGAAGCCTCCAACAGTTTCAAAAATTAGAGCAAGTTGTTGTGC
. : . : . : . : . : . :
rJMFF008I24- TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
rJMSF045E21- TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
JMSF048G10+ TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
rJMSF053C01- TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
JMSF053C01+ TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
JMSF045E21+ TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
JMFF008I24+ TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
____________________________________________________________
consensus TTCTTCTTTCACCCGTTTTTTCTCAGCCTCGATTCTCTCTTCTTCAATCTTCATTTCTTT
. : . : . : . : . : . :
rJMFF008I24- GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
rJMSF045E21- GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
JMSF048G10+ GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
rJMSF053C01- GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
JMSF053C01+ GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
JMSF045E21+ GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
JMFF008I24+ GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
____________________________________________________________
consensus GAGAAGCTGAGGGGTGACAATTTGAGCCATGCCCATTGGCAGCAGGAAATTCCTGTAGTA
. : . : . : . : . : . :
rJMFF008I24- CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
rJMSF045E21- CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
JMSF048G10+ CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
rJMSF053C01- CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
JMSF053C01+ CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
JMSF045E21+ CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
JMFF008I24+ CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
____________________________________________________________
consensus CCCTGCTCTCACACTCGTAAGTTGCCCTTTCTTCCCCAAGTCTTGCACATCCTCTTTCAG
. : . : . : . : . : . :
rJMFF008I24- TATTATCTTTCTTATTTTCTTGGNTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
rJMSF045E21- TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
JMSF048G10+ TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
rJMSF053C01- TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
JMSF053C01+ TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
JMSF045E21+ TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
JMFF008I24+ TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
____________________________________________________________
consensus TATTATCTTTCTTATTTTCTTGGTTTTCTTTTGGCACTCAATAGTGAAATTTGAGGTCCT
. : . : . : . : . : . :
rJMFF008I24- CTCTACCAGTTTTGCAGTTCCNAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
rJMSF045E21- CTCTACCAGTTTTGCAGTTCCNAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
JMSF048G10+ CTCTACCAGTTTTGCAGTTCCAAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
rJMSF053C01- CTCTACCAGTTTTGCAGTTCCAAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
JMSF053C01+ CTCTACCAGTTTTGCAGTTCCAAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
JMSF045E21+ CTCTACCAGTTTTGCAGTTCCAAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
JMFF008I24+ CTCTACCAGTTTTGCAGTTCCAAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
____________________________________________________________
consensus CTCTACCAGTTTTGCAGTTCCAAGTGGTGCGTTCTTGCTTAGCTTGTAATTTCCAAGCAA
. : . : . : . : . : . :
rJMFF008I24- CGAA
rJMSF045E21- CGAAAATGAGCTCCATGACAGAGCTGCTGCCGAGTA
JMSF048G10+ CGAAGATGAGCTCCATGACAGAGCTGCTGCCGAGTACGCCGCCATTTTTGTTATACTAAA
rJMSF053C01- CGAAGATGAGCTCCATGACAGAGCTGCTGCCGAGTACGCCGCCATTTTTGTTATACTAAA
JMSF053C01+ CGAAGATGAGCTCCATGACAGAGCTGCTGCCGAGTACGCCGCCATTTTTGTTATACTAAA
JMSF045E21+ CGAAGATGAGCTCCATGACAGAGCTGCTGCCGAGTACGCCGCCATTTTTGTTATACTAAA
JMFF008I24+ CGAAGATGAGCTCCATGACAGAGCTGCTGCCGAGTACGCCGCCATTTTTGTTATACTAAA
____________________________________________________________
consensus CGAAGATGAGCTCCATGACAGAGCTGCTGCCGAGTACGCCGCCATTTTTGTTATACTAAA
. : . : . : . : . : . :
JMSF048G10+ ACTCTGAGAGGTTTCAG
rJMSF053C01- ACTCTGAGAGGTTTCAGTGCGCCTTTGAAAGCAGCGTTTCT
JMSF053C01+ ACTCTGAGAGGTTTCAGTGCGCCTTTGAAAGCAGCGTTTCT
JMSF045E21+ ACTCTGAGAGGTTTCAGTGCGCCTTTGAAAGCAGCGTTTCT
JMFF008I24+ ACTCTGAGAGGTTTCAGTGCGCCTTTGAAAGCAGCGTTTCTACCTTATGCTACTCTGTCT
____________________________________________________________
consensus ACTCTGAGAGGTTTCAGTGCGCCTTTGAAAGCAGCGTTTCTACCTTATGCTACTCTGTCT
. : . : . : . : . : . :
JMFF008I24+ GTCTGATCTTATCTGTTGCAGAACCGCGATGTGAATGCTGATGAAGCCTGAGGCTGAAAC
____________________________________________________________
consensus GTCTGATCTTATCTGTTGCAGAACCGCGATGTGAATGCTGATGAAGCCTGAGGCTGAAAC